Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi357g00001 ATGGAGACAAATGAAAATGATGGTGTTTCGGTTCGAGAGATATGTGCAAATGGAAGCTGCATGAAGACAGAAGTAGTTGAGGCCAAGCTTGATGAAGGAAATATTGAAGCTGCAGAAGCAGCATTGCGAGAAGGCTTGTCACTCAATTTTGAGGAAGCAAGAGCTCTTCTCGGAAAGATAGAGTATGAGAGAGGTAATATTGAAGGCGCTCTTGTTGTGTTCGATGGGATTGATCTCCAAGCAACCATAGAGAGATTGCAACCTTCCCTTTCTGAGAAGCCACCCGTCAAGAAAGGCCCCACTCGCACTGATTCACCTTCCTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTCAAAGCCAAGTCTCTACAAAAACTGAGGAAATCTACTGAAGCTGCTAAAGAATGCAAGCATATTCTTGATGCCATTGAGAAGATATTTTGTCAGGGCATACCTGATACTCAAGTGGACAATAAATTGCAGGAGATAGTCAGCCATGCAGTAGAACTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATCATGAGGCAATTTCTGCTTATAGGCGCGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAAGAATTTGCTGCATTTTTGCTGTATAGTGGGGTGGAAGCAAGTCCACCCAGTTTAGCAGTTCAGATTGAAGGGTCTTATGTACCTAAAAATAATCTGGAAGAGGCAATACTGCTTCTAATGATTCTTGTGAAAAAGTATTGCCTTGAAAAGACAAAATGGGATCCTTCAATTATGGAACACCTCACGTTTGCACTTTCGGTATGTGACCAAACTTCTATTTTAGCCAAGCAATTGGAAGAGTTGATGCCTGGTGTGTATCATCGTATTGACCGTTGGAATTCTATAGCACTATGTCATAGTGGAGATGGACAAAACAAAAGTGCTTTGAATCTGCTAAGGACATCTTTGCACAAACATGAACGACCAGATGACCTTATATCATTGTTATTGGCTGCCAGGATTTGCAGTGAGGATCCTCATCTTGCTGCTGAGGGGGCAGGTTATGCACAGAAGGCAATCAATAATGCTCAGGGCTTAGATGAGCATTTGAAAGGAGTAGGTCTTCGAATGCTGGGACTTTGCCTGAGAAAGCAAGCTATGGTTGCTTCCTCCGACTTTGAGAGGTCTATTCTTCAGTCCAAAGCTCTGCAATCATTGGAGGAGGCTGTTACACTGGAGCAAAACAATTTTGATCTAGTTTTCGAGTTGGCTATTCAATATGCTGAGCAAAGAAATTTGACTTATGCTTTACGCTATGCCAAGCAGTTCTTTGACAAAACTGGTGGCTCTAAATTGGAAGGTTGGACATTGCTTGCTCTAGTTTTGTCTGCACAAAAAAGATTTTCAGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACAGCAAAATGGGAGCAAGGGCCACTGTTCAGGCTTAAAGCCATGCTGAAGATCTCCCAATCAAGACCCATGGATGCTATTGAAATTTACCAGTACCTTCTTGCATTGGTTCAAGCCCAGAAGAAATCCTTTGGGCTGCTCAGACCTAGTTCACAGGTTGAGAATGATAACGTAAATGAATTTGATGTTTGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGAGAGTTGAAGGAATACTCAGCAGAAACAATGCACGCAGAAGGTGGTATGTTTGATGGTCGGGGACAAAATCCAGAAGCCCTTGCCGCTGCTACTAATGCTGTCCTATTTGAATCAAACCACGTTCCAAGCAAAATCTTGATGGGTTCTGTGATGCTGAAAATGGGTTCTAAAGCTTTGCCTGCTGCTAGAAGCTTACTTTCTGATGCACTTAGAATAGAACCCACTAACCGCAAGGCTTGGTATTACTTGGGATTAACTCACAAAGAAGATGGCAGGTTTGGTGATGCTGCTGACTGCTATCAGGCAGCTTCAATGCTTGAAGAATCGGATCCCATTGAAAGTTTCAGCTCTATACTTTGA 2085 0.4302 METNENDGVSVREICANGSCMKTEVVEAKLDEGNIEAAEAALREGLSLNFEEARALLGKIEYERGNIEGALVVFDGIDLQATIERLQPSLSEKPPVKKGPTRTDSPSSVSQHAASLVLEAIYFKAKSLQKLRKSTEAAKECKHILDAIEKIFCQGIPDTQVDNKLQEIVSHAVELLPELWKQAGCYHEAISAYRRALLSQWNLDNDCCARIQKEFAAFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMILVKKYCLEKTKWDPSIMEHLTFALSVCDQTSILAKQLEELMPGVYHRIDRWNSIALCHSGDGQNKSALNLLRTSLHKHERPDDLISLLLAARICSEDPHLAAEGAGYAQKAINNAQGLDEHLKGVGLRMLGLCLRKQAMVASSDFERSILQSKALQSLEEAVTLEQNNFDLVFELAIQYAEQRNLTYALRYAKQFFDKTGGSKLEGWTLLALVLSAQKRFSEAEVVTDAALDETAKWEQGPLFRLKAMLKISQSRPMDAIEIYQYLLALVQAQKKSFGLLRPSSQVENDNVNEFDVWHGLANLYASLSHWKDAEICLQKARELKEYSAETMHAEGGMFDGRGQNPEALAAATNAVLFESNHVPSKILMGSVMLKMGSKALPAARSLLSDALRIEPTNRKAWYYLGLTHKEDGRFGDAADCYQAASMLEESDPIESFSSIL 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi357g00001 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Gabi357g00001 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Gabi357g00001 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Gabi357g00001 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Gabi357g00001 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Gabi357g00001 694 SUPERFAMILY TPR-like 406 515 IPR011990 GO:0005515
Gabi357g00001 694 Gene3D Tetratricopeptide repeat domain 453 620 IPR011990 GO:0005515
Gabi357g00001 694 Gene3D Tetratricopeptide repeat domain 22 203 IPR011990 GO:0005515
Gabi357g00001 694 Gene3D Tetratricopeptide repeat domain 282 452 IPR011990 GO:0005515
Gabi357g00001 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Gabi357g00001 694 SUPERFAMILY TPR-like 119 443 IPR011990 GO:0005515
Gabi357g00001 694 Gene3D Tetratricopeptide repeat domain 621 690 IPR011990 GO:0005515
Gabi357g00001 694 MobiDBLite consensus disorder prediction 88 109 - -
Gabi357g00001 694 SUPERFAMILY TPR-like 497 682 IPR011990 GO:0005515
Gabi357g00001 694 Pfam Tetratricopeptide repeat 654 685 IPR019734 GO:0005515
Gabi357g00001 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi357g00001 Gabi-Chr357 9402 14624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi357g00001 11 694 Calmodulin-binding Proteins AT2G43040 71.657 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi357g00001 K21843 - gmx:100811897 1130.93