Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3578g00002 ATGGCACTGCTGTGTGGTACAGCTTCGGTGAAGTTTCCTTCATCTTCATTCACTCCTCACAAAAATGCAACAGCTAAATCATCCTTTGTTGGCTTCCAATTGCCACTTTCAAAGCTTTCATTATCTTCTTCTTCTTCTGTTCGGACCCATTTCCCTGCAACTTTCCGTGTCCGTTCTCAGCAAGAGGATTCTTCCCTAGTCACACAAGATCCACGCTTCATGTGCGTTGAACCCGAACCCCGATTCAAAGGCCCGGACATTTGGAACAAGACCTATTATCCAAAAGCTGCAGATCATGTGATTCATGAGAAAACATGGTATGTTGTTGATGCTACTGATAAAATTCTTGGAAGACTAGCATCAACAATTGCTATTCACATCAGAGGGAAAAATTTAGTGACCTATACTCCCAGTGTGGACATGGGTGCGTTTGTAATTGTGGTAAATGCAGAAAAGGTTGCTGTAAGTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGGCACTCGGGACGACCTGGTGGTATGAAAGTGGAGACATTTTCCCAGCTACAGAACAGAATTCCTGAAAGAATTGTTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCAGGAAACTATTCACCCACCTGAAGGTTTATAAGGGCCCAGATCATCCACATGCAGCGCAGAAGCCCATTGACTTGCCAATAAGGGATAAGAGAATACAGTTGGACAGATAG 729 0.4431 MALLCGTASVKFPSSSFTPHKNATAKSSFVGFQLPLSKLSLSSSSSVRTHFPATFRVRSQQEDSSLVTQDPRFMCVEPEPRFKGPDIWNKTYYPKAADHVIHEKTWYVVDATDKILGRLASTIAIHIRGKNLVTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFSQLQNRIPERIVEHAVRGMLPKGRLGRKLFTHLKVYKGPDHPHAAQKPIDLPIRDKRIQLDR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3578g00002 242 PANTHER RIBOSOMAL PROTEIN L13 101 237 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi3578g00002 242 FunFam 50S ribosomal protein L13 89 233 - -
Gabi3578g00002 242 SUPERFAMILY Ribosomal protein L13 102 233 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gabi3578g00002 242 Hamap 50S ribosomal protein L13 [rplM]. 106 241 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi3578g00002 242 ProSitePatterns Ribosomal protein L13 signature. 196 218 IPR023563 GO:0003735|GO:0005840|GO:0006412
Gabi3578g00002 242 CDD Ribosomal_L13 106 219 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi3578g00002 242 Gene3D Ribosomal protein L13 90 238 IPR036899 GO:0003735|GO:0005840|GO:0006412
Gabi3578g00002 242 Pfam Ribosomal protein L13 104 222 IPR005822 GO:0003735|GO:0005840|GO:0006412
Gabi3578g00002 242 NCBIfam 50S ribosomal protein L13 102 231 IPR005823 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3578g00002 108 232 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.061 1.65e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3578g00002 K02871 - gmx:100305981 377.481