Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3577g00004 ATGGCCAATGCATATAGCACTGTGTTTTTGGTTTTACTTCACATTTACCTGAGCTTTGTGTTAACTCATTCAGCACCTGAAAGTGCCATTGTGACACAGATTCCAGGCTTTAATGGAACTTTACCTTCCAAGCACTATGCTGGGTATGTGACAGTGGATGAAAGTCATGGAAGGAATTTGTATTACTATTTTGTTGTGTCAGAAGGTAAACCTTCTGAGGACCCAATGGTTCTGTGGCTTAATGGGGGACCTGGGTGCTCTAGCTTTGATGGCTTCATATATGAACATGGTCCTTTTAATTTTGAAGCAGCAAAGACAAAGGGAAGCTTGCCCACACTGCATCTCAATCCATACAGCTGGTCAAAGGTTTCCAATATTTTATACTTGGATTCTCCTGCTGGTGTGGGATTTTCATACTCGGAGAATGAAACTGATTACGAAACCGGAGACATTAAGACTGCCTTGGATACACATGCCTTTATCCTTAAGTGGTTTGAGCTATACCCCGAGTTCCTTCCTAACCCATTCTTCATTGCTGGAGAGTCATATGCTGGAGTTTATGTGCCTACTCTTGCTTATGAAGTAATGAAAGGAATTGATGCTGGTGTGAAGCCAAATCTGAATTTCAAGGGTTACATGGTTGGAAATGGTGTTACAGATGAAAAATTTGATGGCAATGCTCTTGTTCCATTTGCACACGGAATGGGTCTTATCTCAGATGAGCTGTTCGAGGCGGTTAATAGTGATTGCAATGGGAATTTCTATAATCCACTCAGTGATAATTGTTCTAGCAAGCTTGCAAAAGTTGATAAGGACATCGATGGTTTAAACATATATGACATTCTAGAACCATGCTATCATGGCACAGAGGCACAGGAGATTTCACCATCGTATATTAGGTTGCCGTCGAGCTTCCGGAAGTTGGGTGAGACTGAGAGACCTCTTCCTGTGAGGAAAAGAATGTTTGGTCGTGCTTGGCCGCTAAGAGCACCTGTGAGAGATGGAAATGTACCAACTTGGCCGCAACTGATGAATAGCAACAATGTCCCATGCACTGATGATGAGATTGCGAACACATGGTTGAACAATGAAGCAGTCAGGAAAGCAATTCACACTGCACAGAAAAGTTTGGTCAGTAGTTGGGTGTTATGCACGGACAAAATTTCGTTCAATCATGATGCTGGGAGCATGATCAAGTACCACAAGAACCTAACTTCTAGAGGATATCGAGCACTTATTTTCAGTGGTGATCATGACATGTGTGTTCCTTTTACGGGGAGTCAAGCTTGGACGAGATCAGTTGGGTACAAGATTGTTGATGAATGGAGGCCTTGGTTATTCAATGGTCAAGTTGCTGGGTTTACACAAGGATACGACAACAATCTTACTTTTATGACCATTAAGGGAGCTGGGCATACTGTTCCGGAATATAAACCACAAGAGGCTTTGGATTTTTATAAACGCTTTCTCGCTGGATTGCCAATATGA 1488 0.4234 MANAYSTVFLVLLHIYLSFVLTHSAPESAIVTQIPGFNGTLPSKHYAGYVTVDESHGRNLYYYFVVSEGKPSEDPMVLWLNGGPGCSSFDGFIYEHGPFNFEAAKTKGSLPTLHLNPYSWSKVSNILYLDSPAGVGFSYSENETDYETGDIKTALDTHAFILKWFELYPEFLPNPFFIAGESYAGVYVPTLAYEVMKGIDAGVKPNLNFKGYMVGNGVTDEKFDGNALVPFAHGMGLISDELFEAVNSDCNGNFYNPLSDNCSSKLAKVDKDIDGLNIYDILEPCYHGTEAQEISPSYIRLPSSFRKLGETERPLPVRKRMFGRAWPLRAPVRDGNVPTWPQLMNSNNVPCTDDEIANTWLNNEAVRKAIHTAQKSLVSSWVLCTDKISFNHDAGSMIKYHKNLTSRGYRALIFSGDHDMCVPFTGSQAWTRSVGYKIVDEWRPWLFNGQVAGFTQGYDNNLTFMTIKGAGHTVPEYKPQEALDFYKRFLAGLPI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3577g00004 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Gabi3577g00004 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Gabi3577g00004 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Gabi3577g00004 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Gabi3577g00004 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 479 IPR001563 GO:0004185|GO:0006508
Gabi3577g00004 495 Gene3D - 347 494 - -
Gabi3577g00004 495 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Gabi3577g00004 495 FunFam Carboxypeptidase 24 308 - -
Gabi3577g00004 495 Pfam Serine carboxypeptidase 35 491 IPR001563 GO:0004185|GO:0006508
Gabi3577g00004 495 FunFam Carboxypeptidase 397 492 - -
Gabi3577g00004 495 FunFam Carboxypeptidase 350 494 - -
Gabi3577g00004 495 Gene3D alpha/beta hydrolase 23 314 IPR029058 -
Gabi3577g00004 495 SUPERFAMILY alpha/beta-Hydrolases 31 494 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3577g00004 Gabi-Chr3577 29028 35402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3577g00004 356 495 Calmodulin-binding Proteins AT2G22960 47.143 1.12e-42 148