Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3576g00001 ATGAAACACAACAACAACAAAAATAAAAAAACCTTAGCCACACAAAGTCCAAGAATTCCGATGAGGATTATAGTCCAACACAGAGACTTCCACTCTGTGCTCTTCTTCCTTTTAGTATCATCTTGTTCTATGTTTCATGACACCATTGCTCAATCAAGTGAACAACAAGTAGCTCCCCCTGCTTTGAACAAAAACGCCGACGCAGCCAACGCAACGTTTCCTATGATGCTTGTGGTCTTTGTCTTCGCTTTCTTCATCACTGGCTTCCTCTCCGTTTACATTCGCTATTGTTCCCCAGAGTTCATGTTTCCTCAGAACTCCGTTCGCACCAACGGAGTTGACCCAGAAGTGCTTGCTACGTTTCCCATCATGGCATACTCCACCGTCAAGAACATCAAAACGGGTCACAACGTTGCGCTTCAGTGCGCGGTGTGCTTGGGCGAGTTCGGAGACTTTGACTCGCTTCGCTTGTTGCCAAAGTGCAGCCATGTCTTCCACCCAGATTGCATAGACGCGTGGCTCGCTTCCCACGTGACCTGCCCCGTTTGTCGCTCGAAGCTGAAGCTAGAACGTGGCCAGGTAGCTCTGGAAATCGCGGGTGAGACGAGCGCGCACCAAGTGTTTGATGAAAGCCCTGTGAGAGGAGTTGAAGTTGTTGGCGGCGTTAATGGAGTTGGGGTGAGTGGGCACGTTGATGGGTGCGTTGGGAAGGGTAATGGGTCGTCAAAGATGAGGGCTTTTGGGGTGTTGGTGAGGTCCCATTCAACGGGTCACTCTTTGGTTGAACCAGGGAGGAACATGGAGAGGTTCACTTTGAGGTTGCCTGAGGAAGTGAGGAAGCAGATTCTGGATGATTATGATAAACATGGAACTGCCACAATGATGAAGCGTTCAGCGAGCTACGACGTCGTTTTGCAGATTGAAGATGGGTCGTGTTCGGGGAAAGGTGGTGAAGGTAGCAGCAGTAATAACGGTAAGAATAACCGTTGGGTTCTCTCAGTGACACCTCCGTTTGTTTCTCGTGGTGGTGGTTCTTCGGCTTTGACACCGAATGCTTCCACCACCAGCTCTGGAATTCCAAGGTTTTGGGCTTTTTCCCTTCGAGGAGAAGACAAAGAGTCTCAGGGGAAAACAATTTTCCAAGTCTAA 1149 0.4935 MKHNNNKNKKTLATQSPRIPMRIIVQHRDFHSVLFFLLVSSCSMFHDTIAQSSEQQVAPPALNKNADAANATFPMMLVVFVFAFFITGFLSVYIRYCSPEFMFPQNSVRTNGVDPEVLATFPIMAYSTVKNIKTGHNVALQCAVCLGEFGDFDSLRLLPKCSHVFHPDCIDAWLASHVTCPVCRSKLKLERGQVALEIAGETSAHQVFDESPVRGVEVVGGVNGVGVSGHVDGCVGKGNGSSKMRAFGVLVRSHSTGHSLVEPGRNMERFTLRLPEEVRKQILDDYDKHGTATMMKRSASYDVVLQIEDGSCSGKGGEGSSSNNGKNNRWVLSVTPPFVSRGGGSSALTPNASTTSSGIPRFWAFSLRGEDKESQGKTIFQV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3576g00001 382 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Gabi3576g00001 382 PANTHER RING FINGER DOMAIN-CONTAINING 52 187 - -
Gabi3576g00001 382 MobiDBLite consensus disorder prediction 315 335 - -
Gabi3576g00001 382 MobiDBLite consensus disorder prediction 312 335 - -
Gabi3576g00001 382 SUPERFAMILY RING/U-box 133 191 - -
Gabi3576g00001 382 CDD RING-H2_EL5-like 141 184 - -
Gabi3576g00001 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 189 IPR013083 -
Gabi3576g00001 382 FunFam E3 ubiquitin-protein ligase ATL6 103 190 - -
Gabi3576g00001 382 SMART ring_2 142 183 IPR001841 -
Gabi3576g00001 382 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3576g00001 Gabi-Chr3576 43777 45144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3576g00001 33 360 Rapid Response to Elicitors AT3G05200 34.870 2.54e-53 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3576g00001 K10664 - gmx:102665105 246.514