Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00070 ATGGAACTTTCTGGTCAATTAGAAGGAGAAATCCCAATCCCAATCCCAATAAACAGCAGTTACGATAATGGGGATGAGCACATGACTCATCATGACCCTGCACACAATACCCACATTATGTCTTCCTCATCAATCAAAATTAACCCTTCAAATGGGTTCCCAGGCCTAGAAGATCATGGATCCTACAAGAAAATGGTGAGGTACAAAGAATGCCTAAAGAACCATGCAGCTGGAATGGGAGGAAATGCCACTGATGGATGTGGTGAGTTCTTGCCAAGTGGAGTAGAAGGGACCATAGAAGCTTTGAACTGTTCTGCCTGCCATTGTCACAGAAACTTTCACCGAAAGGAGGTAGAAGGTGAGGCTGAGGCTGAGCATGAGCCCTACAGCCGTAACTCACATTTCAACAGCAGGTTGGGGAAAAAATTCATCCTTGGCCATCACGTAGCTCCTGAGGCTTTGGGTTACCCTACTGCTGCTAACATTCTACCATCAAGAACTGTACCACCTCACCACATGATAATGGGATCCCTGTCCATCCCTTCCGAATCCGATGAACAAGAAGCTAGACCTCCACAGATAGTGAAGAAAAGGTTCAGGACAAAATTCACCCAGGAACAGAAGGACAGAATGATCAACTTTGCTGACAAGGTTGGGTGGAAAATTCAGAAGCAAGAGGAGTCTCTAGTCCAACACTTCTGCCAAGAGATTGGGGTCAAAAGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTAGCCAAAAAGAATCCCCCAGCTGCATAA 792 0.4558 MELSGQLEGEIPIPIPINSSYDNGDEHMTHHDPAHNTHIMSSSSIKINPSNGFPGLEDHGSYKKMVRYKECLKNHAAGMGGNATDGCGEFLPSGVEGTIEALNCSACHCHRNFHRKEVEGEAEAEHEPYSRNSHFNSRLGKKFILGHHVAPEALGYPTAANILPSRTVPPHHMIMGSLSIPSESDEQEARPPQIVKKRFRTKFTQEQKDRMINFADKVGWKIQKQEESLVQHFCQEIGVKRRVLKVWMHNNKHNLAKKNPPAA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00070 263 MobiDBLite consensus disorder prediction 1 37 - -
Gabi3574g00070 263 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
Gabi3574g00070 263 SUPERFAMILY Homeodomain-like 191 257 IPR009057 -
Gabi3574g00070 263 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Gabi3574g00070 263 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 255 - -
Gabi3574g00070 263 FunFam Zinc-finger homeodomain protein 2 183 257 - -
Gabi3574g00070 263 Gene3D - 181 258 - -
Gabi3574g00070 263 NCBIfam homeobox domain, ZF-HD class 196 252 IPR006455 -
Gabi3574g00070 263 Pfam ZF-HD protein dimerisation region 66 118 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00070 Gabi-Chr3574 495357 496148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00070 65 258 ZF-HD Transcription Factor Family AT2G02540 52.970 2.04e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi3574g00070 ZF-HD_dimer 2.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00070 - - qsa:O6P43_031434 357.836