Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00064 ATGGCTTCAAATCATATATCAGCTGCGAGCCATTCAGGGGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCACTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTTTATTACTTCCCACAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTGATCTACCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACGGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAACAGATCAATGCGAGGTGACAAGCCCAGATGATCCTCTGCACGAACCTCCAAGGTGTGCAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGCACTCACGGAGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTGCCACCACTAGATATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCGTTTTCGACATATTTTTCGAGGGCAACCTAGGCGTCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCAAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAACATGCCCTCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACGTTGTTTTCTGTATTTTACAAGCCCAGGACAAGCCGGTCTGAGTTTATTGTGAGTGTCAATAAGTATCTTGAAGCTCAAAGTCATAAACTTTCTGTTGGAATGAGATTCAAAATGAGATTCGAGGGCGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGGAGATAATAAATCATCTGCCTGGGCTGATTCTGAGTGGCGGTCATTAAAGGTGCAATGGGATGAACCATCATCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCCCTTGTGTCGACCCCTACTGCAAACTCCCAGCCGACACAAAGAAACAAGAGATCACGGCCTCCAATTCTACCTTCAACAATGGCTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGAATCTCCATCTTTCTCTTACCGTGACCCTCAACATGGACGAGACCTATATCCATCACCCAAGTTCAATTCTACTGCCAGTAACTTTCTTGGTTTTAGTGGGAAGACTTCTGCTTCCAACAAGTCAATGTACTGGTCTGGTAGGATGGAAAACTCTACAGAATCCTTTTCTCCTATAGCACTTAAAGAATCTGGAGAAAAGAGACAAGGCCCTGGAATTGGCTGTAGGCTCTTTGGAATTGAGTTACTGGAGAACTCTAATGCAGAAGAAAGTATGCCAACAGTCACTTTGTCAGGAAGGGTCTGTGATGATAGGTCTGTTCCATCTTTTGATGCTGAGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTACAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATACGAGGATCTGCTTAGTAAATTGGAACAGATGTTTGACATCAAGGGTGAGCTCTCTGGATCCACAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCTTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACAACAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATGAACGAAGAAGTTAAACCAAGCAAAGCGGATTCTGAGGCAGTAGTCAATCCTGAAGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 2004 0.4396 MASNHISAASHSGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFDLPSKILCKVVNVHLRAEPETDEVYAQITLLPETDQCEVTSPDDPLHEPPRCAVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWRFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSAWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPTANSQPTQRNKRSRPPILPSTMADSSLQGVWKSPVESPSFSYRDPQHGRDLYPSPKFNSTASNFLGFSGKTSASNKSMYWSGRMENSTESFSPIALKESGEKRQGPGIGCRLFGIELLENSNAEESMPTVTLSGRVCDDRSVPSFDAESDQHSEPSNVNRSDIPSVSCDAEKSCLQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLSKLEQMFDIKGELSGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTTEEVKKLSPKIGLPMNEEVKPSKADSEAVVNPEDQSSIVGPGC 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00064 667 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 632 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi3574g00064 667 Pfam AUX/IAA family 536 633 IPR033389 -
Gabi3574g00064 667 FunFam Auxin response factor 287 359 - -
Gabi3574g00064 667 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Gabi3574g00064 667 MobiDBLite consensus disorder prediction 639 667 - -
Gabi3574g00064 667 SUPERFAMILY CAD & PB1 domains 546 620 - -
Gabi3574g00064 667 Gene3D - 121 226 IPR015300 -
Gabi3574g00064 667 CDD B3_DNA 122 224 IPR003340 GO:0003677
Gabi3574g00064 667 MobiDBLite consensus disorder prediction 500 524 - -
Gabi3574g00064 667 MobiDBLite consensus disorder prediction 356 389 - -
Gabi3574g00064 667 ProSiteProfiles PB1 domain profile. 543 636 IPR000270 GO:0005515
Gabi3574g00064 667 FunFam Auxin response factor 122 226 - -
Gabi3574g00064 667 MobiDBLite consensus disorder prediction 507 524 - -
Gabi3574g00064 667 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi3574g00064 667 SUPERFAMILY DNA-binding pseudobarrel domain 112 253 IPR015300 -
Gabi3574g00064 667 Gene3D - 538 632 - -
Gabi3574g00064 667 SMART B3_2 124 226 IPR003340 GO:0003677
Gabi3574g00064 667 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Gabi3574g00064 667 Gene3D - 287 360 - -
Gabi3574g00064 667 FunFam Auxin response factor 538 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00064 Gabi-Chr3574 392509 402908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00064 2 661 B3 DNA Binding Superfamily AT1G59750 71.364 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi3574g00064 AUX_IAA 6.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00064 K14486 - gmx:100793224 1210.28