Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00060 ATGAGAGAAACTGATGGGATTCAGAATGAGTTCGAATCAGCTGAGAGGCTCCGACAGCCCTTGCTTGTGAAGAATGATCATAGGATCAACAATACTTCCCAGTATGCTCTTGTCGGAGCCAAACTTTCTCCGATTCAGAGTCTTGACTACGAGACAATTGAGAATGATCTTTTCAAGCAGGACTGGAGGTCCAGAACAAAGGTTGAGATGTACCAGTATGTTGTCCTAAAGTGGACATTTGCACTTCTTATTGGTTTATTTACTGGGTTTGTTGCCTTCTTTAATAATCTTGGAGTTGAGAATATTTCTGGTTTCAAGCTTTTGCTCACCAACAATCTCTTGCTCAGACAAAAGTATGTTCAGGCTTTTGCAGTGTATGTTGGTTGTAACATGATTTTAGCCATGGCTGCTGCAGCCCTCTGTGCTTACATTGCCCCTGCAGCAGCAGGGTCTGGCATACCCGAGGTGAAGGCATACCTTAATGGTATAGATGCACATTCTATATTGGCTCCGAGTACCCTCTTTGTAAAGATATTTGGTTCAATTTTTGGGGTTGCTGCGGGATTTATTGTGGGAAAGGAAGGACCGATGGTACATACTGGTGCTTGCATAGCCAATTTACTCGGACAAGGTGGTTCTCGAAAATATCGGCTGACGTGGAAATGGCTAAGATACTTTAAGAATGATCGTGATCGAAGGGATTTGATCACATGTGGTGCAGCTGCTGGTGTTGCCGGTGCCTTCCGTTCCCCTGTTGGTGGTGTCCTTTTCGCACTTGAAGAAATAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGCACCTTCTTTACAACGGCTGTAGTAGCTGTAGTGCTGAGAACTATGGTAGAATATTGTGAGGGAGGAAAATGTGGTCTTTTTGGGAAAGGAGGTCTGATTATGTTTGATGTTAATTCAACAAAGCCCGAGTACAGCATATCTGACCTGTTCTTAGTTATATTTCTTGGAGTTATTGGAGGTCTTATGGGAAGCCTTTACAATCATCTCGTGGATAAGGTCCTTCACACTCACACCATTATAAATGAGAGAGGCCCAATATTCAAAGTTGTACTTGTCATGATTATCTCCTTTGTAACCTCTTGTATTCGATTGGGCCTTCCATTGCTATCAAAGTGCGTCCCTTGTCTTCCTAACACGAAGATTGGGGATCAGTGCCGAAGCGCAAGCGTGGTGGGGTTCTCTCAATGTCCACCCAACCACTACAATGACCTTACCTCCCTCTTTTTTACAACCAATGAAAATGCTATCCGAAACCTATTCATTGCTGGGTCTGACAACAGATTTAAGCTTTCTAGTCTTGTAATTTTCTTCGTGGCAATATACTTGCTTGGAATTATCACCTATGGCATTGCCGTTCCCTCTGGGCTCTTTATTCCTGTGATACTTGCCGGAGCATCATATGGGCGTCTTGCGGGGAGTCTCTTAAAACCATTCACTGTTCTTGATGAAGGTTTGTTTGCCCTCCTTGGAGCTGCATCCTTTCTTGGTGCCACCATGAGAATGACCGTTTCTATTTGTATCATACTTCTTGAGCTCACTGATAACCTTCTCATGCTCCCGCCTGTCATGCTAGTTCTGCTTATTTCAAAGTCCGTGGCTGATTGTTTTAACAAAGGTGTTTATGATCAGATAATGGAAATGAAGGGGCTACCTTATATGGAGGCACATGCAGAGCCATACATGAGACATTTAGTTGCTAGTGATGTTGTTTTTGGACCCTTGTTTACTTTTTCTAGCGTTGAAAAAGTGGGGAATATAGTGCATACTTTAAAGATGACGGGACATAATGGGTTTCCCGTAATTGAGAAGCCTCCTTTCTCGGAAGCTCCAAAGTTGTATGGGTTGGTTTTGAGGTCTCATCTGATTGTGCTTCTTAAACAAAGGAGGACATTCACTCGGCAGAGGCTGATAAGTGGGCCTAACATTACGAGGAGCATGTTTATGGCACATGATTTTGCAAAGCCAGGTTCGGGCAAAGGGCTAAAGCTGGAGGATTTAGACATTTCAGAAGAGGAAATGGAAATGTTTGTTGATCTTCAACCAATTACTAATATGTCACCGTATACGGTATTGGAAACAATGTCTCTTGCAAAAGCTGCTCTTCTTTTTCGACAGGTTGGCCTCAGGCACATGCTGGTGGTGCCTAAAACACCCGGAATTCCTCCAATTGTTGGGATCCTGACAAGGCATGATTTCATGCGGGAGCATGTCTTGGGATTATTCCCTCTCTTCAACCACCGCAAAGAAACAGATGATCCTGAACCTCAAATTTCTAATTTATAA 2322 0.4354 MRETDGIQNEFESAERLRQPLLVKNDHRINNTSQYALVGAKLSPIQSLDYETIENDLFKQDWRSRTKVEMYQYVVLKWTFALLIGLFTGFVAFFNNLGVENISGFKLLLTNNLLLRQKYVQAFAVYVGCNMILAMAAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFIVGKEGPMVHTGACIANLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAGAFRSPVGGVLFALEEIASWWRSALLWRTFFTTAVVAVVLRTMVEYCEGGKCGLFGKGGLIMFDVNSTKPEYSISDLFLVIFLGVIGGLMGSLYNHLVDKVLHTHTIINERGPIFKVVLVMIISFVTSCIRLGLPLLSKCVPCLPNTKIGDQCRSASVVGFSQCPPNHYNDLTSLFFTTNENAIRNLFIAGSDNRFKLSSLVIFFVAIYLLGIITYGIAVPSGLFIPVILAGASYGRLAGSLLKPFTVLDEGLFALLGAASFLGATMRMTVSICIILLELTDNLLMLPPVMLVLLISKSVADCFNKGVYDQIMEMKGLPYMEAHAEPYMRHLVASDVVFGPLFTFSSVEKVGNIVHTLKMTGHNGFPVIEKPPFSEAPKLYGLVLRSHLIVLLKQRRTFTRQRLISGPNITRSMFMAHDFAKPGSGKGLKLEDLDISEEEMEMFVDLQPITNMSPYTVLETMSLAKAALLFRQVGLRHMLVVPKTPGIPPIVGILTRHDFMREHVLGLFPLFNHRKETDDPEPQISNL 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00060 773 Gene3D - 567 749 IPR046342 -
Gabi3574g00060 773 CDD ClC_6_like 46 566 - -
Gabi3574g00060 773 PRINTS Plant CLC chloride channel signature 262 270 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3574g00060 773 PRINTS Plant CLC chloride channel signature 417 433 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3574g00060 773 PRINTS Plant CLC chloride channel signature 276 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3574g00060 773 PRINTS Plant CLC chloride channel signature 51 59 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3574g00060 773 PRINTS Plant CLC chloride channel signature 294 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Gabi3574g00060 773 ProSiteProfiles CBS domain profile. 695 756 IPR000644 -
Gabi3574g00060 773 Gene3D Clc chloride channel 69 566 - -
Gabi3574g00060 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 569 748 - -
Gabi3574g00060 773 FunFam Chloride channel ClC3 69 385 - -
Gabi3574g00060 773 PRINTS Chloride channel signature 497 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 PRINTS Chloride channel signature 465 485 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 PRINTS Chloride channel signature 177 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 PRINTS Chloride channel signature 146 163 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 PRINTS Chloride channel signature 553 567 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 PRINTS Chloride channel signature 515 534 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 PRINTS Chloride channel signature 241 260 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 Pfam Voltage gated chloride channel 134 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Gabi3574g00060 773 SUPERFAMILY Clc chloride channel 55 568 IPR014743 -
Gabi3574g00060 773 SUPERFAMILY CBS-domain pair 570 748 IPR046342 -
Gabi3574g00060 773 SMART cbs_1 699 750 IPR000644 -
Gabi3574g00060 773 SMART cbs_1 586 639 IPR000644 -
Gabi3574g00060 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 24 752 - -
Gabi3574g00060 773 Pfam CBS domain 699 747 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00060 Gabi-Chr3574 370318 375654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00060 2 755 Ion Channels AT5G49890 72.391 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00060 K05016 - cave:132178584 1119.38