Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00055 ATGGCTGCAATCTGCCAATGTGTGTCGCCTAAACCTATTGAATGGGTGAAGGGGAAAATGGTTGGATGTGGATCTTTTGGCACTGTCCATTTGGCCATGAACAAATCCACCGGTGGACTTTTTGTTGTGAAATCAGCACATTCAGGGGCTGGACGTGAGGATTTGGAGAATGAGGTCAAAATCCTAAAGACTTTAAATTCATCACCATATATTGTCCAATGTTTGGGGACAGAGGAGGACCAAGGTAACCTCAATGTTTTTATGGAGTATATGGCAGGAGGTAGTTTGGCAGATGTGGCCCACAAATTTGGTGGGTCATTAGATGAAGAGGTTGTTCGTGTGTATACTAGAGAAATTCTTAACGGGTTAAACCATCTTCACCAACATGGAATTGTTCATTGTGACCTTAAGTGCATGAATGTGCTTTTGGGTTCATCTGGTAACATCAAGTTGGCTGATTTTGGATGTGCAAAAATGGTTAAGGACTTTAAGGGTCTTGGAGGTTTGGCAAATTCTTGGCAGTGCATTGGTGGGACTCCTCTATGGATGGCTCCTGAAGTATTGAGAAATGAGATGCTTGATTTTGCTGCTGATATATGGTCTTTGGGATGTACAGTTATTGAAATGGCTACTGGCAGGCCTCCTTGGTCTGATGAGGTTTCAAATCCAATGGCTGCTGTTCTCAGGATTGCACGTGGTGATGTGTTACCTCAGTTTCCAACACATTTCTCAAAGGAGGGTTTGGATTTCTTGAGCAGGTGCTTGGAGAGAGAACCCAGTAAGAGGTGTACCGCTGAGGAGTTACTTAGCCATCCATTTGTTTCAAGGAATTCAGCAACACCTTGTCAAAAAGAATGTGCTTTCTCACCAGCAAGTGTTTTGGAAGTTCAACGTTTTGAGGATACTTATGATCTAGATGAATTAGAAAGTCCACGGGGAAACTCATTCGCGTCCTATGATGACACTGAATGGCAACTGAAAGACAGTGCATTTGGGTCATCAGGGAATTGGATTACTGTCAGATCAGGATGA 1032 0.4322 MAAICQCVSPKPIEWVKGKMVGCGSFGTVHLAMNKSTGGLFVVKSAHSGAGREDLENEVKILKTLNSSPYIVQCLGTEEDQGNLNVFMEYMAGGSLADVAHKFGGSLDEEVVRVYTREILNGLNHLHQHGIVHCDLKCMNVLLGSSGNIKLADFGCAKMVKDFKGLGGLANSWQCIGGTPLWMAPEVLRNEMLDFAADIWSLGCTVIEMATGRPPWSDEVSNPMAAVLRIARGDVLPQFPTHFSKEGLDFLSRCLEREPSKRCTAEELLSHPFVSRNSATPCQKECAFSPASVLEVQRFEDTYDLDELESPRGNSFASYDDTEWQLKDSAFGSSGNWITVRSG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00055 343 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gabi3574g00055 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Gabi3574g00055 343 CDD STKc_MAPKKK 14 274 - -
Gabi3574g00055 343 ProSiteProfiles Protein kinase domain profile. 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00055 343 Pfam Protein kinase domain 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00055 343 FunFam MAP kinase kinase kinase18 10 323 - -
Gabi3574g00055 343 Gene3D Transferase(Phosphotransferase) domain 1 14 318 - -
Gabi3574g00055 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 15 342 - -
Gabi3574g00055 343 SMART serkin_6 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00055 343 SUPERFAMILY Protein kinase-like (PK-like) 15 292 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00055 Gabi-Chr3574 325491 326522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00055 13 282 MAP Kinase Kinase Kinase AT3G06030 45.172 3.10e-75 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi3574g00055 Pkinase 1.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00055 K20716 - lja:Lj0g3v0321299.1 483.796