Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00054 ATGGGAAGGAAAAAGACAGAGGACACTGGCACATCTGCAAAGGCTAAGACAAGTAACAAAGATGCTCCTAAGAAGGAAAAAATTTCTGTCTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGTCTCTTCTTCATCCAGTAAGCCCAAGCCAAAACCTGCTACAAAACCGTCCACATACACTGATGGTATTGATCTTCCTCCCTCGGATGAAGAAGAAGATGAAGAACTCTTGGAAGAGGAGCAACAGCAAAGTAAGCAGAGGCCTGATTTGAAGCCACTTGATGTTCCTATTGCAGAGAAAGAGTTGAAAAAGCGTGAAAAGAAGGATATTTTAGCTGCTTATGCTGCTGAGCAAGCAAAGAAGGAAGCTCTTAGAGATGATCATGATGCTTTCACTGTGGTCATTGGAAGCCGATCTTCAGTGCTTGATGGAGAAGATGATGCTGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGAGGTAAAGAACTTCTGAAGAATACATCAGTGAGGATATCTCATGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGAATGGGCAAGTCCACACTGTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCACTTGAAGCTGTTGTCTCAGCTAACGATGAACTTGTTAAAATTCGACAAGAAGTTGCTTCCCTGCAGAATGCAACTTCTGGTGAAGGAAATGCAGACAAAGATAATAATTATGAGGAGGACGATTCAGGAGAGAAGTTAGTAGAGCTGTATGAAAAATTACAGCTGATGGGGTCTGATGGTGCTGAAGCTCAGGCATCAAAGATTTTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGGGCACTTTTTGTGCAGCCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGCTGGAAGAAAACTTTGGTGGTTGTCTCACATGACAGGGATTTCCTCAATACAGTTTGCACTGAGATTATTCATCTGCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGTGGTTATGAACAGCGCCGTAAAGAAATGAATAAGAAGTATGAGATTTATGACAAGCAACTGAAAGCAGCGAAAAGGAGTGGAAACCGAGCTCAGCAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCAGCTAAAGAAGCATCTAAAAGCAAGGGCAAGGGCAAGGTTGATGAGGACGAGGCCGCACCAGAGGTACCACAGAAGTGGAGGGACTACAGCGTCGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAATCGGGAGGATTTCAGACTCTCAAATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCAAATGGAGCTGGAAAGTCTACACTGCTGAATCTTCTTGCTGGTGATTTGGTTCCTAGTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGTAGATATTCCCAACACTTTGTTGACCTTCTAACAATGGATGAAACACCTGTTCAGTATCTTCTTCGTCTCCACCCAGACCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGTTACCTAGTCATAACCATCTTACCCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGAGTGGTCTTTACGTCCATATCCATGTCAAAACCCCACATTTTATTGTTAGATGAACCCACGAATCATCTGGATATGCAAAGTATTGATGCATTAGCTGATGCACTGGATGAATTCACCGGTGGGGTTGTTCTTGTTAGTCATGATTCTAGATTGATATCACGTGTGTGTGACGATGAAGAAAGGAGTCAAATCTGGGTTGTTGAGAATGGTACTGCCAGAACTTTCCCTGGAACATTTGAGGACTACAAGGACGAGTTGCTTAGAGAGATTAAAGCTGAAGTTGATGATTGA 2166 0.4354 MGRKKTEDTGTSAKAKTSNKDAPKKEKISVSAMLASMDEKPDKPKKVSSSSSKPKPKPATKPSTYTDGIDLPPSDEEEDEELLEEEQQQSKQRPDLKPLDVPIAEKELKKREKKDILAAYAAEQAKKEALRDDHDAFTVVIGSRSSVLDGEDDADANVKDITIENFSVSARGKELLKNTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVASLQNATSGEGNADKDNNYEEDDSGEKLVELYEKLQLMGSDGAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFAAAKEASKSKGKGKVDEDEAAPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVENGTARTFPGTFEDYKDELLREIKAEVDD 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00054 721 MobiDBLite consensus disorder prediction 1 101 - -
Gabi3574g00054 721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 494 719 IPR003439 GO:0005524
Gabi3574g00054 721 Pfam ABC transporter 176 347 IPR003439 GO:0005524
Gabi3574g00054 721 FunFam ABC transporter F family member 4 159 443 - -
Gabi3574g00054 721 Coils Coil 411 431 - -
Gabi3574g00054 721 CDD ABCF_EF-3 494 696 - -
Gabi3574g00054 721 Gene3D - 158 444 IPR027417 -
Gabi3574g00054 721 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 131 714 - -
Gabi3574g00054 721 SMART AAA_5 520 696 IPR003593 GO:0016887
Gabi3574g00054 721 SMART AAA_5 185 391 IPR003593 GO:0016887
Gabi3574g00054 721 FunFam ABC transporter F family member 4 459 721 - -
Gabi3574g00054 721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 161 422 IPR003439 GO:0005524
Gabi3574g00054 721 MobiDBLite consensus disorder prediction 428 469 - -
Gabi3574g00054 721 CDD ABCF_EF-3 161 392 - -
Gabi3574g00054 721 Gene3D - 458 720 IPR027417 -
Gabi3574g00054 721 MobiDBLite consensus disorder prediction 71 85 - -
Gabi3574g00054 721 MobiDBLite consensus disorder prediction 86 101 - -
Gabi3574g00054 721 Coils Coil 712 721 - -
Gabi3574g00054 721 ProSitePatterns ABC transporters family signature. 319 333 IPR017871 GO:0005524|GO:0016887
Gabi3574g00054 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 414 IPR027417 -
Gabi3574g00054 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 707 IPR027417 -
Gabi3574g00054 721 Pfam ABC transporter 511 646 IPR003439 GO:0005524
Gabi3574g00054 721 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00054 Gabi-Chr3574 318423 322338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00054 493 672 Calmodulin-binding Proteins AT2G36910 30.583 4.89e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00054 K06184 - gmx:100806865 1211.05