Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00051 ATGGGTTGTGTATGCTCCAAAGGAAAATTCGCAAATGATTATGTTGCTGGTAACGGTAAGCATAAAAAAAAAGACAAAGAATTGAAGGCAATTAGATCCTCAGCGTCCCTAACAGTAACAGAGAATGATTCTATTGCTACTGCACGCCTCATATCCAATCCCTCTCGGGCTGCAACTCCCATTTCCTCCGATGAAGGGGAGAAGAACAAGAACGGGGCAACTACTGCAAAACCACTACTTCAGATGGGATCAGACGTGGGTGGAGGACAAGGACAAGGACAAGGACAACCTAGGGTCTCTAAGATATTTAGTTTAAATAGAGGGGAAAGAGGAGCACAGGTTCTTGCTGGCTGGCCTTCTTGGCTCACCGCAGTTGCAGGGGAAGCCATTAGTGGTTGGATACCTCGCAGAGCTGATTCATTTGAGAAGTTGGATAAGATTGGTCAAGGAACTTACAGCAGTGTTTATAGAGCTCGTGATCTTGAGACAAATAAAATTGTAGCATTGAAGAAGGTTCGATTTGCTAATATGGATCCAGACAGTGTTCGTTTTATGGCAAGAGAAATTCTTGTGCTGCGAAGACTTGATCATCCAAATGTCATGAAGCTTGAAGGCATGATTACTTCAAGGGTTTCTGGCAGCTTGTACCTTATTTTTGAATATATGGAGCATGATCTTGCAGGGCTTGCAGCAATACCTGGCATCAAGTTTACTGAAGCACAGATCAAGTGTTATATGCAACAACTTCTTCGTGGCCTTGAGCATTGTCACAGTCGTGGTGTTATGCACCGTGACATCAAGGGTGCAAATCTTCTGCTTGATAATAATGGCAATCTGAAGATTGGTGATTTTGGGCTTGCAACTTTGTTTCAGCCATCCCAAGGGCAGCCTTTAACTAGTCGTGTAGTGACATTGTGGTACCGGCCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAATTGTTTGCTGGGAAGCCAATAATGCCTGGGCGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTTTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACCGCATGCAACAATTTTTAAACCTCAGCAACCTTACAAACGTGTTGTTTCTGAGACTTTCAAGGATTTTCCTTCATCAGCACTGAGTCTCTTGGAGGTCCTTCTTGCTATAGAACCGAAAGATCGTGGAACTGCATCTCTAGCACTTCAGAATGAGTTCTTCACAGCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCTCCGAGTAAGGAGTTTGATGCCAAACTTCGAGAAGAGGAAGCTCGAAGACGAAGAGCAACAAATAAAGGACATGAACAGGAATCAGTTAGGAGGAATTTTAAAGAGTCTAAAGCTGTGCCAGCACCTGATGCTAATGCTGAGCTTCAGGCATCAATGGAGAAGAGACAAGGGCAGTGTAATACTAAGTCCATTAGTGAGAAGTACAATCCTGAAGGGGATAGCGGTTCTGGCTTCCCTCTTGAACCTGCACAGTCAAGAGCGCTCAACGTCTTCTCTCATTCTGGCCAGTCAATGCATCCGAGTGCTTATGGATCCTCACGCCATATGAATTTGAAAGAAGAAGATGTGTTTAGATCAAGAAACTGTGAGTTGAGAAAACAAAAATCCTACTGGCAAGGTAGCTCTGCACAATTGTCAAGATTTTCTAATTCAGTTGCAGTTCGAGGTGACTCACGGCTTGATATGAGTGGAGACTGTAGTGTGAATTCGCAGTGGCCAGAGGATCAATTTGGTATGAGATATAGCCGTCCGGCTGATGATGAGTCCAACCAATTGCTGGATGCACCCAAGTCTTCACGCAGGAAGGACTACCATCCTGTTGGGAAGGATCGTGCCATGGGCTATGCTCGCAAAAATGGCCGCATCCACTATTCCGGACCATTGCTGCCTCCAGAGGATAATCTTGAAGAAATGCTTAAGGAACACGAAAGGCAAATCCAAGAGGCTGTCCGCAAAGCTCGTTTGGATAAGGACAGGACAAAAAGGGCCTAA 2094 0.4465 MGCVCSKGKFANDYVAGNGKHKKKDKELKAIRSSASLTVTENDSIATARLISNPSRAATPISSDEGEKNKNGATTAKPLLQMGSDVGGGQGQGQGQPRVSKIFSLNRGERGAQVLAGWPSWLTAVAGEAISGWIPRRADSFEKLDKIGQGTYSSVYRARDLETNKIVALKKVRFANMDPDSVRFMAREILVLRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLAGLAAIPGIKFTEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGANLLLDNNGNLKIGDFGLATLFQPSQGQPLTSRVVTLWYRPPELLLGATDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYKRVVSETFKDFPSSALSLLEVLLAIEPKDRGTASLALQNEFFTAKPLPCDPSTLPKYPPSKEFDAKLREEEARRRRATNKGHEQESVRRNFKESKAVPAPDANAELQASMEKRQGQCNTKSISEKYNPEGDSGSGFPLEPAQSRALNVFSHSGQSMHPSAYGSSRHMNLKEEDVFRSRNCELRKQKSYWQGSSAQLSRFSNSVAVRGDSRLDMSGDCSVNSQWPEDQFGMRYSRPADDESNQLLDAPKSSRRKDYHPVGKDRAMGYARKNGRIHYSGPLLPPEDNLEEMLKEHERQIQEAVRKARLDKDRTKRA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00051 697 MobiDBLite consensus disorder prediction 434 518 - -
Gabi3574g00051 697 MobiDBLite consensus disorder prediction 492 511 - -
Gabi3574g00051 697 PANTHER CELL DIVISION PROTEIN KINASE 139 431 - -
Gabi3574g00051 697 MobiDBLite consensus disorder prediction 444 478 - -
Gabi3574g00051 697 Gene3D Transferase(Phosphotransferase) domain 1 229 465 - -
Gabi3574g00051 697 CDD STKc_CDK9_like 141 425 - -
Gabi3574g00051 697 SMART serkin_6 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00051 697 SUPERFAMILY Protein kinase-like (PK-like) 135 432 IPR011009 -
Gabi3574g00051 697 Gene3D Phosphorylase Kinase; domain 1 136 228 - -
Gabi3574g00051 697 FunFam probable serine/threonine-protein kinase At1g54610 224 465 - -
Gabi3574g00051 697 MobiDBLite consensus disorder prediction 627 651 - -
Gabi3574g00051 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Gabi3574g00051 697 Coils Coil 666 693 - -
Gabi3574g00051 697 MobiDBLite consensus disorder prediction 614 663 - -
Gabi3574g00051 697 Pfam Protein kinase domain 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00051 697 Coils Coil 443 463 - -
Gabi3574g00051 697 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00051 697 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524
Gabi3574g00051 697 FunFam probable serine/threonine-protein kinase At1g54610 128 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00051 Gabi-Chr3574 300098 305184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00051 133 463 Core Cell Cycle Gene Families AT5G10270 50.578 1.85e-116 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi3574g00051 Pkinase 2.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00051 - - gmx:100805055 1045.42