Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00039 ATGGCGTCTGCTAGCCTTGGAAATGGTGGGGTTGGCAGTTCCAGGTCTGTTAGTAGTGGCTTCAGGGGTTCATCTAGTTCTGTGGATTGGCTTGGGAGAGAGATGCTTGAGATGTCCTTGAGGGACAAGGTCGACCATGATGACGACAGAGATAGCGAGCCTGATATCATTGATGGTGTGGGTGCTGAAACAGGACATGTGATAAGAACCAGCATTGGTGGCCGAAATGGTCAATCTAAGCAGAATATTAGTTATATAGCGGAACACGTGGTTGGAACGGGCTCTTTCGGTGTTGTTTTTCAAGCAAAATGTAGAGAAACAGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAAGCGCTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATCATCCAAATATTGTTGCCCTTAGACATTGTTTCTTTTCAACCACCGACAAAGAAGAAGTTTACTTGAATCTTGTGCTTGAATATGTTCCTGAAACTGTGAATCGTAGTGCAAGGAACTATAGCAGGATCAACCAGCGAATGCCTTTAATATACGTGAAGCTTTATACCTACCAGATTTGCAGAGCCCTTGCTTATATCCATAATTGCATTGGTATATGTCATCGTGACATCAAACCTCAGAACCTGCTTGTGAACCCACACACTCATCAGCTGAAACTATGCGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCTTACATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATACACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAACTAGTTGAAATAATCAAGGTCTTGGGAACTCCAACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACAGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGCGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGGTCGCCCACTTCCTCCTCTGTTTAATTTTAAACCTCAGGAACTTTCTGGTATACCCCCTGACGTTATCAATCGACTTGTTCCAGAGCATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1272 0.4347 MASASLGNGGVGSSRSVSSGFRGSSSSVDWLGREMLEMSLRDKVDHDDDRDSEPDIIDGVGAETGHVIRTSIGGRNGQSKQNISYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEEVYLNLVLEYVPETVNRSARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLVPEHARKQNLFMALHT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00039 423 CDD STKc_GSK3 80 372 IPR039192 -
Gabi3574g00039 423 SUPERFAMILY Protein kinase-like (PK-like) 85 396 IPR011009 -
Gabi3574g00039 423 FunFam Shaggy-related protein kinase kappa 165 413 - -
Gabi3574g00039 423 ProSitePatterns Protein kinases ATP-binding region signature. 91 115 IPR017441 GO:0005524
Gabi3574g00039 423 MobiDBLite consensus disorder prediction 1 26 - -
Gabi3574g00039 423 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 53 415 - -
Gabi3574g00039 423 Pfam Protein kinase domain 87 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00039 423 Gene3D Transferase(Phosphotransferase) domain 1 165 413 - -
Gabi3574g00039 423 Gene3D Phosphorylase Kinase; domain 1 70 164 - -
Gabi3574g00039 423 SMART serkin_6 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3574g00039 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Gabi3574g00039 423 FunFam Glycogen synthase kinase-3 beta 69 164 - -
Gabi3574g00039 423 ProSiteProfiles Protein kinase domain profile. 85 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00039 Gabi-Chr3574 228841 241120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00039 91 377 Core Cell Cycle Gene Families AT1G76540 34.915 4.54e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi3574g00039 Pkinase 2.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00039 K03083 - gmx:100799387 804.283