Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00008 ATGGAACTATCAGATTTGCAAAACAACAAGCAGAGCAGCAACACAGGCACTAGTCATCAACATCCCCACCATCACCACCATCAACACCAACACCAACAACAACAATCTTCTTCTTCTTCTTCGCAACAACAACAACAACAACAACAACTTGTGGTCCCTTTTGATGGCAGGCCATCACCCTTCATTATGGGCTCCATCTCAATCCAAGCTGGCCTCACCACATCATCTTCTTCCTCTTCCTCTTCTTCTTCTTCTTCCAATTCTTCCTCATCGTCCTCTTCTTCTGCTTCTGCTTCTGCCTCCGCCGCCCCCACCACAACCACCACCCCTCCTCACCTCATCGACGCCTCCCTAGCCATCGCCACCAGATCTGACCCCTCTCGCTCCCCACCCCTCCTCGATTCCGCCAAGAAAACTACCCAAATTCAACAACAACTATCCTCCTCCTCCTCCGCCGCCGCCGCCACCGCCCTCGCCGTCGTGAACCCGTCGAAGCGATCCACCAAGGACAGGCACACCAAGGTCGACGGTCGCGGTCGTAGAATTCGAATGCCGGCGACGTGTGCGGCTAGGGTTTTCCAATTGACGAGAGAATTGGGGCACAAGTCGGACGGAGAGACAATCGAATGGCTGCTTCAGCAGGCGGAGCCGGCGATCATCGCGGCCACCGGAACGGGAACAATCCCGGCGAATTTCTCTACCCTGAACGTGTCCCTTCGGAGTAGCGGGTCGACGCTTTCGGCTCCGCCGTCAAAGTCGGCACCTCACACGTTTCATGGGGCGTTAGCACTGTCTCACCACCCTTACGAGGAAGCGTTCCAGCACACAGCTTTGCTAGGGTTTCATCCACACCACTCTCAGCAGCAACATCAACATCATCAACAACAACAACAAATCATGACCGCTGATCAAATAGCAGAAGCACTTCCTAATAGTGGTGGTGGTGACTCGAGCGAGAACTATATGAGAAAACGCTTCAGAGAAGATCTGTTCAAAGAGGATAACAACCAACAATCACAAAATGAAAGCGGTGATGGGTCTTCTCCTTCACCCAAGGCATTCATGCCAAAGCAGCAGCAGCAGCAGCAGCAACAACAAGAAGAAGGTTCATCTGGTTCAGGGCTTCTTCGGCCTTCAAATTTGTTACCAGCAACTGCCATGTGGGCTGTGACACCCGCACCGGCAACTGCTGCTGGAAGCACAATTTGGATGCTTCCGGTGAGTGCTGGTGCCCCTTCTGCTGCCTCTGCAGCTTCCGAGACTCACATGTGGCCTTTTTCTTCACCAACTCAAACTGCTGCTGCTGCTGCAAATACTCCGCTACATTTCATGCCAAGATTCAACCTTCAAGGTGGTCTTGAATTCCAAGGTGGACGTGGGCATGGACCTGGGGGTACTCTACAATTGGGTTCCATGTTAATGCCGCAGCAACCATCTCAGCATCTGGGTCTGGGCATGTCTGACACCAACTTGGGTATGTTGGCAGCTCTCAATGCTTACACTAGAGCTGGTTTCAATATGAATTCTGATCACCAAACTCATACCTTGGAGCATCATCATCAACACCAACACCAACCTCAACCTACTGAGAGTGGAGAAGATGGTGCTAATAGCTCCCAATGA 1623 0.5213 MELSDLQNNKQSSNTGTSHQHPHHHHHQHQHQQQQSSSSSSQQQQQQQQLVVPFDGRPSPFIMGSISIQAGLTTSSSSSSSSSSSSNSSSSSSSSASASASAAPTTTTTPPHLIDASLAIATRSDPSRSPPLLDSAKKTTQIQQQLSSSSSAAAATALAVVNPSKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALSHHPYEEAFQHTALLGFHPHHSQQQHQHHQQQQQIMTADQIAEALPNSGGGDSSENYMRKRFREDLFKEDNNQQSQNESGDGSSPSPKAFMPKQQQQQQQQQEEGSSGSGLLRPSNLLPATAMWAVTPAPATAAGSTIWMLPVSAGAPSAASAASETHMWPFSSPTQTAAAAANTPLHFMPRFNLQGGLEFQGGRGHGPGGTLQLGSMLMPQQPSQHLGLGMSDTNLGMLAALNAYTRAGFNMNSDHQTHTLEHHHQHQHQPQPTESGEDGANSSQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 1 148 - -
Gabi3574g00008 540 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 494 IPR005333 GO:0003700
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 514 540 - -
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 66 113 - -
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 1 18 - -
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 32 53 - -
Gabi3574g00008 540 ProSiteProfiles TCP domain profile. 168 222 IPR017887 -
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 133 148 - -
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 336 378 - -
Gabi3574g00008 540 Pfam TCP family transcription factor 167 329 IPR017887 -
Gabi3574g00008 540 MobiDBLite consensus disorder prediction 332 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00008 Gabi-Chr3574 50100 52638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00008 165 490 TCP Transcription Factor Family AT1G35560 46.667 1.04e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gabi3574g00008 TCP 3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00008 - - cave:132168412 513.842