Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00006 ATGGAGACTCACTTCAATCACAGTCTCTTCGAGAGGCGCCCCTTCCTCAAGTCCAAGGCTCCCGCCGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCAACCGGAGGGAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACTTTAAAAGCCTTGAAAGAGAAGGAAAAAGAACCTTCAGCACCCGAGCCAGAACCTGAGCCAACTACAGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAAGAAGCATTCTCACATCCATGGAGAGAGGCAATTTACTTGCCATTATGAGGGATGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCCTCATTCATACTGGGGAGAGGGACTTTGTATGTACTTTTGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAACTATCATATATGTCCATACCCGGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCATATTGCATCTCATCATGAAAAGAATACACCAGTGGATGTGACAAAGTATACACCGCCTTCGGAGAAACAAACAAAAACTACTAAACCTTCCGGGGGAAATTACGGTTCGGCATCATCTGATCGCCCACATGCATGTCCTTATAAAGGGTGTGAAAAGGCCTACATTCATGAATACAAGCTTAAACTACATTTGAAGAGGGAGCATCCTGGCCATATGTCTGATGAAAATGCTGTGCATGCCCAGGCTAATGTTGACAACGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGCAGGAAACAATCAAATGGTAAAAGTCAGAAACAAAGTAGGCCCAAGCCAAACCTGAAGTTGCCTCCTCCCAAAATTGCCCAACGAAAAGGGTCAGCTCCAACTCCTGCCACTTTGAATGTGATTAAAAAACCTTGGCCAGTGAAAGATGAAACATACGATGAAGACAGCGAAGAAACTGAGGAGGATGGCGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA 1116 0.4364 METHFNHSLFERRPFLKSKAPAVKWVKEWVPQDVVATGGKCMLLRWVTEDTLKALKEKEKEPSAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALKKHSHIHGERQFTCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCTFEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNTPVDVTKYTPPSEKQTKTTKPSGGNYGSASSDRPHACPYKGCEKAYIHEYKLKLHLKREHPGHMSDENAVHAQANVDNEMDEASDQDAYGRKQSNGKSQKQSRPKPNLKLPPPKIAQRKGSAPTPATLNVIKKPWPVKDETYDEDSEETEEDGDNVEDGWRYAGNNEDDDEETEYED 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00006 371 FunFam Putative zinc finger protein 143 103 133 - -
Gabi3574g00006 371 FunFam Zinc finger protein 410 134 161 - -
Gabi3574g00006 371 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Gabi3574g00006 371 Gene3D Classic Zinc Finger 135 164 - -
Gabi3574g00006 371 Gene3D Classic Zinc Finger 103 134 - -
Gabi3574g00006 371 Gene3D Classic Zinc Finger 165 195 - -
Gabi3574g00006 371 FunFam Zinc finger transcription factor YY1 204 271 - -
Gabi3574g00006 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Gabi3574g00006 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Gabi3574g00006 371 FunFam zinc finger transcription factor YY1 163 194 - -
Gabi3574g00006 371 MobiDBLite consensus disorder prediction 335 349 - -
Gabi3574g00006 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Gabi3574g00006 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Gabi3574g00006 371 MobiDBLite consensus disorder prediction 199 223 - -
Gabi3574g00006 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Gabi3574g00006 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Gabi3574g00006 371 FunFam zinc finger transcription factor YY1 77 102 - -
Gabi3574g00006 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Gabi3574g00006 371 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Gabi3574g00006 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Gabi3574g00006 371 Gene3D Classic Zinc Finger 200 274 - -
Gabi3574g00006 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 346 - -
Gabi3574g00006 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Gabi3574g00006 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Gabi3574g00006 371 MobiDBLite consensus disorder prediction 273 371 - -
Gabi3574g00006 371 MobiDBLite consensus disorder prediction 283 299 - -
Gabi3574g00006 371 SMART c2h2final6 136 160 IPR013087 -
Gabi3574g00006 371 SMART c2h2final6 166 190 IPR013087 -
Gabi3574g00006 371 SMART c2h2final6 77 101 IPR013087 -
Gabi3574g00006 371 SMART c2h2final6 106 130 IPR013087 -
Gabi3574g00006 371 SMART c2h2final6 229 254 IPR013087 -
Gabi3574g00006 371 MobiDBLite consensus disorder prediction 187 228 - -
Gabi3574g00006 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Gabi3574g00006 371 Gene3D Classic Zinc Finger 77 102 - -
Gabi3574g00006 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Gabi3574g00006 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00006 Gabi-Chr3574 31700 35449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00006 10 357 C2H2 Transcription Factor Family AT4G06634 65.574 5.30e-150 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3574g00006 zf-C2H2 0.0088 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00006 - - zju:107412546 622.083