Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00005 ATGGAGACTCACTTCAATCACAGTCTCTTCGAGAGGCGCCCCTTCCTCAAGTCCAAGGCTCCCGCCGTTAAATGGGTCAAAGAATGGGTTCCCCAAGATGTTGTAGCAACAGAGGATACTTTAAAAGCCTTGAAAGAGAAGGAAAAAGAACCTTCAGCACCCGAGCCAGAACCTGAGCCAACTACAGAAGTACTTTTTCTTTGCAGCTATGAAGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAAGAAGCATTCTCACATCCATGGAGAGAGGCAATTTACTTGCCATTATGAGGGATGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCCTCATTCATACTGGGGAGAGGGACTTTGTATGTACTTTTGAAGGCTGTGGTAAGGTGATTATGCAGGCCTTCTCCCTGGATTTCAACCTGAGGTCTCACATGAAGACACATTCACAAGAGAACTATCATATATGTCCATACCCGGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCATATTGCATCTCATCATGAAAAGAATACACCAGTGGATGTGACAAAGTATACACCGCCTTCGGAGAAACAAACAAAAACTACTAAACCTTCCGGGGGAAATTACGGTTCGGCATCATCTGATCGCCCACATGCATGTCCTTATAAAGGGTGTGAAAAGGCCTACATTCATGAATACAAGCTTAAACTACATTTGAAGAGGGAGCATCCTGGCCATATGTCTGATGAAAATGCTGTGCATGCCCAGGCTAATGTTGACAACGAAATGGATGAAGCAAGTGACCAAGATGCCTATGGCAGGAAACAATCAAATGGTAAAAGTCAGAAACAAAGTAGGCCCAAGCCAAACCTGAAGTTGCCTCCTCCCAAAATTGCCCAACGAAAAGGGTCAGCTCCAACTCCTGCCACTTTGAATGTGATTAAAAAACCTTGGCCAGTGAAAGATGAAACATACGATGAAGACAGCGAAGAAACTGAGGAGGATGGCGACAATGTTGAAGATGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAGGAAACAGAATATGAAGACTGA 1095 0.4338 METHFNHSLFERRPFLKSKAPAVKWVKEWVPQDVVATEDTLKALKEKEKEPSAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALKKHSHIHGERQFTCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCTFEGCGKVIMQAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNTPVDVTKYTPPSEKQTKTTKPSGGNYGSASSDRPHACPYKGCEKAYIHEYKLKLHLKREHPGHMSDENAVHAQANVDNEMDEASDQDAYGRKQSNGKSQKQSRPKPNLKLPPPKIAQRKGSAPTPATLNVIKKPWPVKDETYDEDSEETEEDGDNVEDGWRYAGNNEDDDEETEYED 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00005 364 Pfam Zinc finger, C2H2 type 159 183 IPR013087 -
Gabi3574g00005 364 SUPERFAMILY beta-beta-alpha zinc fingers 139 186 IPR036236 -
Gabi3574g00005 364 FunFam zinc finger transcription factor YY1 156 187 - -
Gabi3574g00005 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 95 IPR013087 -
Gabi3574g00005 364 Gene3D Classic Zinc Finger 121 158 - -
Gabi3574g00005 364 Gene3D Classic Zinc Finger 193 267 - -
Gabi3574g00005 364 SUPERFAMILY beta-beta-alpha zinc fingers 90 132 IPR036236 -
Gabi3574g00005 364 MobiDBLite consensus disorder prediction 328 342 - -
Gabi3574g00005 364 SMART c2h2final6 66 90 IPR013087 -
Gabi3574g00005 364 SMART c2h2final6 159 183 IPR013087 -
Gabi3574g00005 364 SMART c2h2final6 222 247 IPR013087 -
Gabi3574g00005 364 SMART c2h2final6 95 119 IPR013087 -
Gabi3574g00005 364 SMART c2h2final6 125 153 IPR013087 -
Gabi3574g00005 364 MobiDBLite consensus disorder prediction 180 221 - -
Gabi3574g00005 364 MobiDBLite consensus disorder prediction 276 292 - -
Gabi3574g00005 364 FunFam Zinc finger transcription factor YY1 197 264 - -
Gabi3574g00005 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 124 IPR013087 -
Gabi3574g00005 364 FunFam zinc finger transcription factor YY1 66 91 - -
Gabi3574g00005 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 189 IPR013087 -
Gabi3574g00005 364 MobiDBLite consensus disorder prediction 192 216 - -
Gabi3574g00005 364 ProSitePatterns Zinc finger C2H2 type domain signature. 224 247 IPR013087 -
Gabi3574g00005 364 Gene3D Classic Zinc Finger 66 91 - -
Gabi3574g00005 364 ProSitePatterns Zinc finger C2H2 type domain signature. 161 184 IPR013087 -
Gabi3574g00005 364 MobiDBLite consensus disorder prediction 266 364 - -
Gabi3574g00005 364 ProSitePatterns Zinc finger C2H2 type domain signature. 97 119 IPR013087 -
Gabi3574g00005 364 SUPERFAMILY beta-beta-alpha zinc fingers 67 91 IPR036236 -
Gabi3574g00005 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 252 IPR013087 -
Gabi3574g00005 364 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 339 - -
Gabi3574g00005 364 FunFam Putative zinc finger protein 143 92 122 - -
Gabi3574g00005 364 Gene3D Classic Zinc Finger 159 188 - -
Gabi3574g00005 364 Gene3D Classic Zinc Finger 92 120 - -
Gabi3574g00005 364 SUPERFAMILY beta-beta-alpha zinc fingers 217 245 IPR036236 -
Gabi3574g00005 364 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00005 Gabi-Chr3574 31700 35449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00005 10 350 C2H2 Transcription Factor Family AT4G06634 68.169 2.97e-158 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3574g00005 zf-C2H2 0.0086 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00005 - - zju:107412546 585.489