Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00004 ATGGCTATGTCACTGTGGAGACCTCGCACGGCTTCTTCGGCGCTTAACTTGTTCTCCAATGCTTTTCGCCATTTTTCTTCCGATGTTGCAAATAGCACTCGTGATAGTGCTCGCGAGAGTATGATGAATCAAATGATGTATTCTGACATAAACTCACAAATTGGGAGTTGCATGCCGCTGTCTGCAATGCGAATTGGAACAATCATTCACAACATTGAGTTGAACCCGGGGCAAGGTGGTAAGCTGGTTAGAGCAGCTGGAACTAATGCAAAGATCTTGAAAGACCCCACATCAGCATACTGTCTAATACAACTCCCCTCGGGTGTTAAAAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGTACCGTCTCTAATCCAAGCCATGGAGATCGCAAGCTTAGGAAGGCTGGACATAGCCGATGGCTTGGTCGAAGACCTGTTGTTCGAGGAGTGGCCATGAACCCTGTAGATCATCCTCATGGTGGAGGAGAGGGTAAGAGCAAGAGTAGTGGCCGATGGAGCAAAGGATCTCGCACTCCTTGGGGCAAGCCAACTAAGGGTGGTTACAAAACTGGACCCCTCAAGCGCAGAAAGTAG 600 0.4867 MAMSLWRPRTASSALNLFSNAFRHFSSDVANSTRDSARESMMNQMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKDPTSAYCLIQLPSGVKKLIDSRCRATVGTVSNPSHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGRWSKGSRTPWGKPTKGGYKTGPLKRRK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00004 199 ProSitePatterns Ribosomal protein L2 signature. 147 158 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gabi3574g00004 199 SMART Ribosomal_L2_C_2 52 185 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gabi3574g00004 199 FunFam 60S ribosomal protein L2, mitochondrial 48 124 - -
Gabi3574g00004 199 SUPERFAMILY Translation proteins SH3-like domain 54 189 IPR008991 -
Gabi3574g00004 199 PANTHER RIBOSOMAL PROTEIN L2 47 197 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gabi3574g00004 199 Gene3D Ribosomal protein L2, domain 3 125 199 IPR014726 -
Gabi3574g00004 199 Gene3D - 48 124 IPR014722 -
Gabi3574g00004 199 Pfam Ribosomal Proteins L2, C-terminal domain 53 183 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gabi3574g00004 199 MobiDBLite consensus disorder prediction 151 199 - -
Gabi3574g00004 199 FunFam 50S ribosomal protein L2 125 199 - -
Gabi3574g00004 199 NCBIfam 50S ribosomal protein L2 48 195 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00004 Gabi-Chr3574 28526 30510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00004 21 164 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 39.869 1.09e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00004 - - gmx:100792418 317.39