Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3574g00002 ATGGCTGTACATACAAAACCCCGTCTTATTGCTTACTCAGACGAAATTGTAGATGGGCAGTCTATTTTTGTTTCTTCGAACTGTCTTCCTATCAAGGCTTTGAAATATGAACCTGCTGGTCACGCCTTCCATTGTGCTGCACTTAAACTTCGTGGTGTTCAGGAGGATAATAAAGATGCTGATAATAAAAAAGTGGTTGGTGAAAAGGAACAGACATATCTCCCATCTGATTCTTATAGCAGCAAGAGCAAAAAGAAATCTGGTGATGGGGACAAGCAGCAAGACCACTATGCATTATTGGGTATGAGCCATCTAAGGTATCTTGCTACAGAGGATCAAATACGTAGAAGCTATCGTGAAACTGCCCTGAGGTTTCATCCTGACAAACAGGCTGCTCTACTTCTTGCTGAGGAAACTGAAGCTGCAAAGCAGGCAAAGAAGGATGAAATAGAAAGCCATTTTAAGGCAATACAGGAAGCATATGAAGTGTTGATTGATCCTGTGAAGAGAAGAATTTATGATTCCACAGATGAGTTTGACGATGAGATTCCGACTGACTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGCCCCGCATTTATGAGGAATGGGCGGTGGTCAGTCAGTCAACCAATTCCAACACTAGGTGATGATAATACTCCATTGAAAGAAGTTGATAATTTCTACAATTTTTGGTACTCCTTCAAAAGCTGGAGGGAGTTTCCCCATACTGATGAGTTTGATCTTGAGCAAGCTGAATCTCGGGACCATAGGAGGTGGATGGAAAGGCAGAATGCAAAACTGTCAGAAAAAGCTAGGAAGGATGAGTATGCACGGGTACGCACTCTTGTTGATAATGCTTATAAGAGAGACCCAAGAATATTGAGAAGAAAGGAAGAGGAAAAAGCTGAGAAGCAAAGGAAAAAGCAGGCTAGGTTCCTGGCAAAGAAGTTGCAGGAAGAAGAAGCAGTCAGAATTGCAGAAGAGGAGAAGCGACGAAAAGAGGAGGAAGATAGACGAGCTGCAGAAGCTGCTTTACAACAGAAGAAGGTGAAGGAGAAAGAGAAAAAGCTCTTGCGAAAGGAGCGAACGCGTCTTCGAAATCTTTCAGGACCTATTTTGGCACAGCATTTACTTGACATTTCTGATGATGGTATAGAAAGGCTTTGCATGTCACTGGATATTGAGCAGCTGAGGGGTTTGTGTGAGAAAATGGAGGGCAAAGAGATGTTAGAGCAAGCAAAAGTTGTAAGAGATGCACTGAGTTGTAAGGAAGATTCCGTTGATGAGAAAGATGAGAAAAGTAATCAACATAATGGTTCCATCAAGTCTAATGGTAGTGCTTCACTAAGCAACATGGAGAAGAAGGAGAAACCTTGGAATAAAGAAGAGATTGAGCTATTGAGGAAAGGAATGCTAAAATATCCCAAAGGAACTTCACGTAGATGGGAGGTTATTTCAGAATACATTGGTACTGGAAGATCTGTTGAAGAAATTATGAAGGCAACTAAAACTGTTCTCCTCCAGAAGCCTGATTCGTCCAAAGCTTTTGATGCCTTTTTAGAGAAAAGGAAACCTGCTGCACAATCAATTGCATCTCCTCTGACAACCAGAGAAGAATTGGAAGGGTCTGAAAGTAGTGCTGCTGCTGCTGCTGCGGCGGCCGCTACGGCCACCGCCACTGCCGCCTCAACAACAAATAACTCAGAAGACTCTCATACAGATAATCAGAACTCTACTGCAAATGCAAATGGAGTTTCCGAACAAGATGTGTGGTCTGCAGTGCAGGAAAGAGCACTGGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAACTAACCAGAGATGGGAGCGTGTCGCCACAGCTGTCCCTGGGAAGACTATGAATCAGTGCAAGAAAAAATTTGCCGTGATGAAGGAGAGTTTCAGGAGCAAGAAAAGTGCAGTTTAA 1947 0.4294 MAVHTKPRLIAYSDEIVDGQSIFVSSNCLPIKALKYEPAGHAFHCAALKLRGVQEDNKDADNKKVVGEKEQTYLPSDSYSSKSKKKSGDGDKQQDHYALLGMSHLRYLATEDQIRRSYRETALRFHPDKQAALLLAEETEAAKQAKKDEIESHFKAIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVSQPIPTLGDDNTPLKEVDNFYNFWYSFKSWREFPHTDEFDLEQAESRDHRRWMERQNAKLSEKARKDEYARVRTLVDNAYKRDPRILRRKEEEKAEKQRKKQARFLAKKLQEEEAVRIAEEEKRRKEEEDRRAAEAALQQKKVKEKEKKLLRKERTRLRNLSGPILAQHLLDISDDGIERLCMSLDIEQLRGLCEKMEGKEMLEQAKVVRDALSCKEDSVDEKDEKSNQHNGSIKSNGSASLSNMEKKEKPWNKEEIELLRKGMLKYPKGTSRRWEVISEYIGTGRSVEEIMKATKTVLLQKPDSSKAFDAFLEKRKPAAQSIASPLTTREELEGSESSAAAAAAAAATATATAASTTNNSEDSHTDNQNSTANANGVSEQDVWSAVQERALVQALKAFPKETNQRWERVATAVPGKTMNQCKKKFAVMKESFRSKKSAV 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3574g00002 648 SUPERFAMILY Chaperone J-domain 81 173 IPR036869 -
Gabi3574g00002 648 MobiDBLite consensus disorder prediction 558 590 - -
Gabi3574g00002 648 SUPERFAMILY Homeodomain-like 452 501 IPR009057 -
Gabi3574g00002 648 MobiDBLite consensus disorder prediction 328 352 - -
Gabi3574g00002 648 CDD SANT 459 501 IPR001005 -
Gabi3574g00002 648 SMART sant 456 509 IPR001005 -
Gabi3574g00002 648 SMART sant 588 640 IPR001005 -
Gabi3574g00002 648 SMART dnaj_3 94 169 IPR001623 -
Gabi3574g00002 648 FunFam Myb family transcription factor 586 646 - -
Gabi3574g00002 648 CDD SANT 592 638 IPR001005 -
Gabi3574g00002 648 Gene3D - 584 648 - -
Gabi3574g00002 648 CDD DnaJ 95 166 IPR001623 -
Gabi3574g00002 648 Pfam Myb-like DNA-binding domain 591 635 IPR001005 -
Gabi3574g00002 648 Gene3D - 452 510 - -
Gabi3574g00002 648 MobiDBLite consensus disorder prediction 58 93 - -
Gabi3574g00002 648 Gene3D DnaJ domain 78 187 IPR036869 -
Gabi3574g00002 648 MobiDBLite consensus disorder prediction 425 458 - -
Gabi3574g00002 648 Pfam DnaJ domain 95 174 IPR001623 -
Gabi3574g00002 648 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Gabi3574g00002 648 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Gabi3574g00002 648 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 647 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Gabi3574g00002 648 SUPERFAMILY Homeodomain-like 590 644 IPR009057 -
Gabi3574g00002 648 ProSiteProfiles Myb-like domain profile. 592 638 IPR001005 -
Gabi3574g00002 648 MobiDBLite consensus disorder prediction 439 454 - -
Gabi3574g00002 648 PRINTS DnaJ domain signature 118 133 IPR001623 -
Gabi3574g00002 648 PRINTS DnaJ domain signature 149 169 IPR001623 -
Gabi3574g00002 648 PRINTS DnaJ domain signature 100 118 IPR001623 -
Gabi3574g00002 648 MobiDBLite consensus disorder prediction 528 590 - -
Gabi3574g00002 648 ProSiteProfiles dnaJ domain profile. 95 177 IPR001623 -
Gabi3574g00002 648 Coils Coil 317 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3574g00002 Gabi-Chr3574 15177 19642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3574g00002 96 295 C2H2 Transcription Factor Family AT1G74250 28.452 4.36e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3574g00002 DnaJ 9.1e-17 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3574g00002 K09522 - gmx:100814414 950.273