Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3571g00002 ATGAATGACTTATTCTCCGGCTCGTTCTCTCGCTTGCGTAACGACCAAGCCTCGCCGGAGCGCCACCACGTCATCGAGATGACAGCCGCCGCAGGCGGCGGAGGAGGCAACGGCGGTGGAGTTAACCTTGACAAATTCTTCGAGGACGTGGAGGGAGTAAAGGAGGAGCTGAAGGAACTTGAGGAGCTAGCACAGAGGCTACAGAGTAGCCACGAACAGAGCAAGACGGTGCACCATGCAAAGGCCGTTAGGGATCTTCGTTCACGCATGGACGACGACGTTTCGGTGGCTTTGAAGAAGGCCAAGGTCGTGAAGCTTAAGCTCGAGTCTCTTGAGCGGTCCAATGCTGCGAACCGGAACCTCCCTGGCTGTGGACCCGGTTCGTCTTCAGACCGAACTCGAACCTCCGTGGTCAACGGTTTGAAGAAGAAGCTTAAGGACTCCATGGAGAAATTTAACGATCTTCGCCAGCTGATCTCGTCGGAGTATAGGGAAACCGTCCAACGCCGATACTTCACCGTCACCGGCGAGAACCCCGATGACAAGACCCTTGATCTGTTGATCTCCACTGGTGAGAGTGAGACTTTCCTTCAGAAAGCCATTCAAGAACAAGGGAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAGGAGATAGAGAAGAATCTGAAGGAGTTGCACCAAGTGTTCCTTGACATGACTGTGTTGGTGCAATCTCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGGGAGAGCTCACTCGTTTGTGCGCACTGGAGCTGAGCAGTTAGTGACTGCAAGGAAGCACCAGAAAAACACAAGGAAATGGACCTGTTTTTGTATTATACTTGTTCTTGTGATCATCTTGTTTGTGGTGCTCTTCACTGTGAAACCATGGCAACATAATGGCAGTGGTGGCAATGGTGGTAATCAGCCTGCTCCGGTTCAAACACCTCCATCTCCTCCTCCTCCTCCTGCTGCTTAA 1011 0.5163 MNDLFSGSFSRLRNDQASPERHHVIEMTAAAGGGGGNGGGVNLDKFFEDVEGVKEELKELEELAQRLQSSHEQSKTVHHAKAVRDLRSRMDDDVSVALKKAKVVKLKLESLERSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMEKFNDLRQLISSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMTVLVQSQGEQLDDIESHVGRAHSFVRTGAEQLVTARKHQKNTRKWTCFCIILVLVIILFVVLFTVKPWQHNGSGGNGGNQPAPVQTPPSPPPPPAA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3571g00002 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 213 275 IPR000727 -
Gabi3571g00002 336 PANTHER SYNTAXIN 60 296 IPR045242 -
Gabi3571g00002 336 FunFam Syntaxin 132 206 306 - -
Gabi3571g00002 336 CDD SynN 43 200 IPR006011 GO:0016020
Gabi3571g00002 336 Pfam Syntaxin 45 248 IPR006011 GO:0016020
Gabi3571g00002 336 SMART tSNARE_6 208 275 IPR000727 -
Gabi3571g00002 336 Coils Coil 43 77 - -
Gabi3571g00002 336 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 40 170 - -
Gabi3571g00002 336 CDD SNARE_syntaxin1-like 212 274 - -
Gabi3571g00002 336 SMART SynN_4 38 164 IPR006011 GO:0016020
Gabi3571g00002 336 SUPERFAMILY t-snare proteins 41 268 IPR010989 GO:0016020|GO:0016192
Gabi3571g00002 336 Coils Coil 138 158 - -
Gabi3571g00002 336 ProSitePatterns Syntaxin / epimorphin family signature. 219 258 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi3571g00002 336 MobiDBLite consensus disorder prediction 313 336 - -
Gabi3571g00002 336 Gene3D - 209 306 - -
Gabi3571g00002 336 Pfam SNARE domain 249 301 IPR000727 -
Gabi3571g00002 336 Coils Coil 213 233 - -
Gabi3571g00002 336 Gene3D - 41 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3571g00002 Gabi-Chr3571 10591 12511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3571g00002 35 336 SNARE and Associated Proteins AT3G11820 72.549 4.47e-150 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3571g00002 K08486 - gmx:100809258 492.656