Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi356g00006 ATGGAAAATCACCACCAAATGCAACAACACCGCCGTGAATTGACCTTCTTAAGCTCTGCCGGCTTCCTCCGCCAGAATTTAGATCCGACAACCGACAACACCGCCGAGGACAGCGATCCTTCCATCAAAGAAGTAGATTTCTTCTCAACGGGTTCACCGCCCAATAATGATAACACTAATAATACCAATAACAAAAATAGCCAGCGGCAGGTTCATCATGATCAAGAGGCTCAGCATCATCGTCATGGGTTCACTTCAGATGGATCAGCAACTCTTATCACTGATCCCCTCGTAAACACGGCGCTGAATTTAAAGTGTGCCAGTGCTGGAATTTCAAGGTCAACAAATAATGCAAATCCTAATACTGAGCTGAGTACACTTCAAAGGGAATTACATAGACAACAAAAAGAGAATCGCAAGTTGAGAACTATGCTGGATGAAACCACCAAAGACTATAACCAACTACAATTGTTCATGGCCTTGCAGAAACAAAAGTCTTGTCAGGTGGTGACAAATAAGATGATGTCGCCGCAGCGATTTCTTGACCCGCTGCCATGCACCGAATTAGACGTCAATGTCGCATCGGTTTCTGATGATAAGACTGATCAAGAGACTTTGGTTTCTCCCTCAAACAATGCTGAGCCAATTATAACAAAGCATCGTGACCATCATTTGACTAAACTCAAAATTGGAAAGCAACTCAATGCTTGTCCTACTCCTGATGAAGGAGATGTTCTTGACGGGTCATCCTCAATGAGTTGGGGATCATCTAAGAGTCCCAAGTTAGAAGAATCCAAAACTGGCGAGCTTCCTTTAAGAAAAGCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCTCAGATTAGCGATGGGTGTCAATGGAGGAAATATGGACAAAAAATGGCCAAGGATAACCCTTGCCCTCGTGCCTATTATCGTTGCACTATGGCTCTAGGATGCCCAGTTCGTAAGCAGGTGCAAAGATGCGCAGATGACAAGACAGTGTTGATAACAACTTACGAAGGAAATCATAACCATCCTCTCCCACCAGCAGCGACTGCCATGGCGAATTCTACATCAGCAGCTGCAGCGATGCTCTTATGTGGTTCAGGTTCAACAACGAGCAAGGAAGCACTAATAAACTCAGCAGGATATTTCTCTTCAATACCTTATGTCTCAATGGCAACCCTGTCAGCTTCTGCACCATTCCCCACTATCACCCTCGACATGACCCAAATCTCCAACCCCATGCAGCTATTTCGAGAGCCTTCCTCTGGGGTTACATTCCCTCCACCATTGCCATTGCATGGAACTGCTTTTTCTGAGTTAATAGGGCACCCCGTTATGTTCCCCCAAAAGCTGCCACTTGGAGGTGTGCCTCTAGTTCAAAATGGGCAACGACAACCTTTGACTAGGTTGGAGACATTGAGTGCAGCCATTGCTTCGGATCCAAACTTCACTGCAGCGGTGACAGCTGCGATCTCATCAATTATTGGTGAACCAAGATCAGGCAGTGATGGAAATAATAATATTAGCAACAATGGGTCCACACAACTTCCGCAATCTTGTACTGCATACCAAGTCACCAACTAG 1593 0.4557 MENHHQMQQHRRELTFLSSAGFLRQNLDPTTDNTAEDSDPSIKEVDFFSTGSPPNNDNTNNTNNKNSQRQVHHDQEAQHHRHGFTSDGSATLITDPLVNTALNLKCASAGISRSTNNANPNTELSTLQRELHRQQKENRKLRTMLDETTKDYNQLQLFMALQKQKSCQVVTNKMMSPQRFLDPLPCTELDVNVASVSDDKTDQETLVSPSNNAEPIITKHRDHHLTKLKIGKQLNACPTPDEGDVLDGSSSMSWGSSKSPKLEESKTGELPLRKARVSVRARSEAPQISDGCQWRKYGQKMAKDNPCPRAYYRCTMALGCPVRKQVQRCADDKTVLITTYEGNHNHPLPPAATAMANSTSAAAAMLLCGSGSTTSKEALINSAGYFSSIPYVSMATLSASAPFPTITLDMTQISNPMQLFREPSSGVTFPPPLPLHGTAFSELIGHPVMFPQKLPLGGVPLVQNGQRQPLTRLETLSAAIASDPNFTAAVTAAISSIIGEPRSGSDGNNNISNNGSTQLPQSCTAYQVTN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi356g00006 530 MobiDBLite consensus disorder prediction 501 530 - -
Gabi356g00006 530 FunFam probable WRKY transcription factor 31 273 350 - -
Gabi356g00006 530 Coils Coil 124 151 - -
Gabi356g00006 530 Gene3D WRKY domain 273 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi356g00006 530 MobiDBLite consensus disorder prediction 69 83 - -
Gabi356g00006 530 ProSiteProfiles WRKY domain profile. 283 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi356g00006 530 MobiDBLite consensus disorder prediction 48 68 - -
Gabi356g00006 530 Pfam WRKY DNA -binding domain 290 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi356g00006 530 SUPERFAMILY WRKY DNA-binding domain 282 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi356g00006 530 MobiDBLite consensus disorder prediction 25 89 - -
Gabi356g00006 530 MobiDBLite consensus disorder prediction 234 269 - -
Gabi356g00006 530 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 115 513 IPR044810 GO:0003700
Gabi356g00006 530 SMART WRKY_cls 288 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi356g00006 Gabi-Chr356 59190 62826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi356g00006 110 498 WRKY Transcription Factor Family AT4G04450 40.845 4.82e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi356g00006 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi356g00006 - - gmx:100780044 509.605