Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi356g00005 ATGGAAAATCACCACCAAATGCAACAACACCGCCGTGAATTGACCTTCTTAAGCTCTGCCGGCTTCCTCCGCCAGAATTTAGATCCGACAACCGACAACACCGCCGAGGACAGCGATCCTTCCATCAAAGAAGTAGATTTCTTCTCAACGGGTTCACCGCCCAATAATGATAACACTAATAATACCAATAACAAAAATAGCCAGCGGCAGGTTCATCATGATCAAGAGGCTCAGCATCATCGTCATGGGTTCACTTCAGATGGATCAGCAACTCTTATCACTGATCCCCTCGTAAACACGGCGCTGAATTTAAAGTGTGCCAGTGCTGGAATTTCAAGGTCAACAAATAATGCAAATCCTAATACTGAGCTGAGTACACTTCAAAGGGAATTACATAGACAACAAAAAGAGAATCGCAAGTTGAGAACTATGCTGGATGAAACCACCAAAGACTATAACCAACTACAATTGTTCATGGCCTTGCAGAAACAAAAGTCTTGTCAGAAGGTGGTGACAAATAAGATGATGTCGCCGCAGCGATTTCTTGACCCGCTGCCATGCACCGAATTAGACGTCAATGTCGCATCGGTTTCTGATGATAAGACTGATCAAGAGACTTTGGTTTCTCCCTCAAACAATGCTGAGCCAATTATAACAAAGCATCGTGACCATCATTTGACTAAACTCAAAATTGGAAAGCAACTCAATGCTTGTCCTACTCCTGATGAAGGAGATGTTCTTGACGGGTCATCCTCAATGAGTTGGGGATCATCTAAGAGTCCCAAGTTAGAAGAATCCAAAACTGGCGAGCTTCCTTTAAGAAAAGCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCTCAGATTAGCGATGGGTGTCAATGGAGGAAATATGGACAAAAAATGGCCAAGGATAACCCTTGCCCTCGTGCCTATTATCGTTGCACTATGGCTCTAGGATGCCCAGTTCGTAAGCAGGTGCAAAGATGCGCAGATGACAAGACAGTGTTGATAACAACTTACGAAGGAAATCATAACCATCCTCTCCCACCAGCAGCGACTGCCATGGCGAATTCTACATCAGCAGCTGCAGCGATGCTCTTATGTGGTTCAGGTTCAACAACGAGCAAGGAAGCACTAATAAACTCAGCAGGATATTTCTCTTCAATACCTTATGTCTCAATGGCAACCCTGTCAGCTTCTGCACCATTCCCCACTATCACCCTCGACATGACCCAAATCTCCAACCCCATGCAGCTATTTCGAGAGCCTTCCTCTGGGGTTACATTCCCTCCACCATTGCCATTGCATGGAACTGCTTTTTCTGAGTTAATAGGGCACCCCGTTATGTTCCCCCAAAAGCTGCCACTTGGAGGTGTGCCTCTAGTTCAAAATGGGCAACGACAACCTTTGACTAGGTTGGAGACATTGAGTGCAGCCATTGCTTCGGATCCAAACTTCACTGCAGCGGTGACAGCTGCGATCTCATCAATTATTGGTGAACCAAGATCAGGCAGTGATGGAAATAATAATATTAGCAACAATGGGTCCACACAACTTCCGCAATCTTGTACTGCATACCAAGTCACCAACTAG 1596 0.4555 MENHHQMQQHRRELTFLSSAGFLRQNLDPTTDNTAEDSDPSIKEVDFFSTGSPPNNDNTNNTNNKNSQRQVHHDQEAQHHRHGFTSDGSATLITDPLVNTALNLKCASAGISRSTNNANPNTELSTLQRELHRQQKENRKLRTMLDETTKDYNQLQLFMALQKQKSCQKVVTNKMMSPQRFLDPLPCTELDVNVASVSDDKTDQETLVSPSNNAEPIITKHRDHHLTKLKIGKQLNACPTPDEGDVLDGSSSMSWGSSKSPKLEESKTGELPLRKARVSVRARSEAPQISDGCQWRKYGQKMAKDNPCPRAYYRCTMALGCPVRKQVQRCADDKTVLITTYEGNHNHPLPPAATAMANSTSAAAAMLLCGSGSTTSKEALINSAGYFSSIPYVSMATLSASAPFPTITLDMTQISNPMQLFREPSSGVTFPPPLPLHGTAFSELIGHPVMFPQKLPLGGVPLVQNGQRQPLTRLETLSAAIASDPNFTAAVTAAISSIIGEPRSGSDGNNNISNNGSTQLPQSCTAYQVTN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi356g00005 531 MobiDBLite consensus disorder prediction 235 269 - -
Gabi356g00005 531 SMART WRKY_cls 289 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi356g00005 531 SUPERFAMILY WRKY DNA-binding domain 283 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi356g00005 531 ProSiteProfiles WRKY domain profile. 284 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi356g00005 531 Coils Coil 124 151 - -
Gabi356g00005 531 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 114 514 IPR044810 GO:0003700
Gabi356g00005 531 MobiDBLite consensus disorder prediction 69 83 - -
Gabi356g00005 531 MobiDBLite consensus disorder prediction 48 68 - -
Gabi356g00005 531 Gene3D WRKY domain 274 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi356g00005 531 MobiDBLite consensus disorder prediction 25 89 - -
Gabi356g00005 531 Pfam WRKY DNA -binding domain 291 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi356g00005 531 FunFam probable WRKY transcription factor 31 274 351 - -
Gabi356g00005 531 MobiDBLite consensus disorder prediction 502 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi356g00005 Gabi-Chr356 59190 62826 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi356g00005 110 499 WRKY Transcription Factor Family AT4G04450 40.610 3.49e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi356g00005 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi356g00005 - - gmx:100785933 516.153