Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi356g00003 ATGGGAAAAGCCTCTAGTTCTTCCTCCTCATCCACCAACAGCAGCAGAAACCCTGTTATCTCAACTGCATCCTCTCTCGCAAACCCAAATACTCAACACCTTCATACAGATCTTAGGCTCGGACCAAGCATTTCCTCCACTCAACATGTTGGCTCTTCTATTTCAAGGGAACAATGGCAACCAATTCAGCCCCATCTAAGAAGTTCACAAGCTGCCGAAGTATATGATTGTAGCGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCGATTGGTAGAAAACTCAATTTATTAGCTCATGATGGCTATCATGAGTTAGTACAAACTCTTGAACAAATGTTCGACACTACCATTTTGTGGGGAACTGAGATGGATGGAGTGCAACCAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGGGACGTCCCTTGGGAGATGTTCTTATCATCTGTAAAAAGGTTGAAGATCACTAAGGTCGACACATTCGGAGTTGATCCCAACGTTGTTTTGAGCAAATTCCACGGATTGGAATCCACATTCGCTTGA 579 0.4352 MGKASSSSSSSTNSSRNPVISTASSLANPNTQHLHTDLRLGPSISSTQHVGSSISREQWQPIQPHLRSSQAAEVYDCSDHSSFFVKVYMEGIPIGRKLNLLAHDGYHELVQTLEQMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITKVDTFGVDPNVVLSKFHGLESTFA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi356g00003 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 171 IPR003311 GO:0005634|GO:0006355
Gabi356g00003 192 Pfam AUX/IAA family 76 170 IPR033389 -
Gabi356g00003 192 Gene3D - 76 176 - -
Gabi356g00003 192 MobiDBLite consensus disorder prediction 1 59 - -
Gabi356g00003 192 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Gabi356g00003 192 SUPERFAMILY CAD & PB1 domains 77 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi356g00003 Gabi-Chr356 31887 34831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi356g00003 9 180 B3 DNA Binding Superfamily AT5G62000 30.556 5.25e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi356g00003 AUX_IAA 5.2e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi356g00003 K14484 - gmx:100781660 278.485