Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3566g00056 ATGTCCAATGTAACAGAAACACCTGACGAAACAGAACGCAAAAACTCCAACAACAAAAAAGGACATATAGGCATTGGAAAAATAATGGCAGGAAGTAAGGTTATCTTTGTCATCTTGGCTACTTTTGCCATTACCATTCCATGCCTTGAGGCTGGCATTGCTGTTTTTGACGATTTTCTCAAAAAGCAAGCCGACATTGCCCACGAAATTGCTTTGAAGTCCTACATACCCAACCCTGAAAACATTACATTCGAGCTCAATATGCATGTTCATAGGGCTTTGGAGGAGTTGGATTTGGAGGAGGAAGAGATCAACGGTACAAGGAGGGAACTAAAGGAGAAATACACTGGACCATGCTTAGCCACGAACCCAATTGACCGTTGCTGGAGGTGCAACAAAGACTGGGCAAAAGATCGCCAAAAGTTAGCCAAATGCGGGAAGGGATTCGGAAGAAAGGCAGTAGGAGGACTCGGCGGCAAGATCTACGTCGTCACCGACGAATCCGACGAGGACATGGTTAACCCTAAACCTGGTACTCTAAGGTTTGCTGTCGTCCAAAAGGGACCACTGTGGATCACATTTGCACGTAGCATGATCATCAGATTGAAGCAGGAGTTGCTGGTTTCGTCAGACAAGACCATCGATGGCCGTGGAGCCAATGTGCAAATTAGGGATGGTGGTGGAATTACCATGCAGTTTGTTAACAACGTCATCATCCATGGTATTCGCGTCAAAAATATCCAGGCGAAGGAAGGTGGTATGATTAGGGACTCTTGGAACCACTATGGACAAAGAACAAGGAGTGATGGAGATGCCATCTCCGTTTTTGGTTCCTCAAACATTTGGATTGATCATATTTCCTTGTCCGAAGCTGCTGATGGTCTTATTGACGTTATCCAGGGTTCTACCGCTATCACCATCTCAAATTGCCACATGACCAAGCACAACGATGTGATGCTGTTTGGAGCTAGTGACTCCTACTCCGGTGACAAGATAATGCAGATTACAGTGGCATTCAACCATTTTGGACAGGGACTGATCCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTTTTGAACAATGATTACACTCACTGGCTTATGTATGCAATTGGTGGAAGCTCAGGACCAACCATTCTTAGCCAGGGAAATCGTTTCATTGCACCTAACAACGATGCTGCTAAGGAGATAACACACAGAGATTATGCAACACCAGAAGTGTGGTCCCAATGGCAATGGAGATCAGAGAATGACTTGTTCATGAACGGTGCAAAGTTTGTTCAAGCTGGGGCACCTCTTGGTAAATTGCCATTTAACAAAGGATACCTAATGAAACCAAGAGAAGGATCACAAGCTGCTAGGCTTACACGGTTTTCTGGGGCTCTTGCTTGCACTGTGGGCAGGCCTTGCTAG 1419 0.456 MSNVTETPDETERKNSNNKKGHIGIGKIMAGSKVIFVILATFAITIPCLEAGIAVFDDFLKKQADIAHEIALKSYIPNPENITFELNMHVHRALEELDLEEEEINGTRRELKEKYTGPCLATNPIDRCWRCNKDWAKDRQKLAKCGKGFGRKAVGGLGGKIYVVTDESDEDMVNPKPGTLRFAVVQKGPLWITFARSMIIRLKQELLVSSDKTIDGRGANVQIRDGGGITMQFVNNVIIHGIRVKNIQAKEGGMIRDSWNHYGQRTRSDGDAISVFGSSNIWIDHISLSEAADGLIDVIQGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYATPEVWSQWQWRSENDLFMNGAKFVQAGAPLGKLPFNKGYLMKPREGSQAARLTRFSGALACTVGRPC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3566g00056 472 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3566g00056 472 SUPERFAMILY Pectin lyase-like 123 463 IPR011050 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 169 194 IPR018082 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 269 290 IPR018082 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 413 437 IPR018082 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 205 221 IPR018082 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 443 466 IPR018082 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 145 162 IPR018082 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Gabi3566g00056 472 PRINTS Pollen allergen Amb family signature 371 390 IPR018082 -
Gabi3566g00056 472 Pfam Pectate lyase, N terminus 53 111 IPR007524 GO:0030570
Gabi3566g00056 472 PANTHER PECTATE LYASE 18-RELATED 67 470 IPR045032 GO:0030570
Gabi3566g00056 472 SMART amb_all 197 394 IPR002022 -
Gabi3566g00056 472 Coils Coil 90 114 - -
Gabi3566g00056 472 Gene3D - 122 465 IPR012334 -
Gabi3566g00056 472 Pfam Pectate lyase 203 388 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3566g00056 Gabi-Chr3566 466623 468954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3566g00056 32 472 Polysaccharide Lyase AT5G15110 52.350 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3566g00056 K01728 - gmx:100780236 723.391