Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3566g00049 ATGGGGTTTAAGAATAATGCAATTCAGGCAGGGAGTTTGGATGTGGGAAAGTCAAAGGGAAGGATGGAGAAGGATAGTGATGAAAAGAAGATTGGATGTTGCGGTAAATTCAGTTTAATTGGGAGCTGCATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACTAGTGCTCACAGTGTGGAAAAAACACCTGCACGTGAGAAAAGCAAAAAGGAAGCAAGTGCTCCTCCAGAGTCCTCTACAACTACTAGTAATGCAGAAAGTATCCCTTCCACTCCAAAAGTAAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTCACATTCAATGAGCTTAAGTCGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGCGAGGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAATGGAACTGCACCTGTGAAACCGGGTACTGGGCTTACCGTTGCAGTCAAGACCCTCAACCACGATGGACTTCAGGGTCACAAAGAGTGGCTTGCTGAGTTAAATATTCTCGGTGATCTTGTCCATCAAAATCTGGTTAAATTGGTTGGTTTCTGTATTGAAGATCACCAAAGATTGTTGGTTTATGAGTTTATGCCCCGTGGAAGTTTGGAGAACCATCTCTTCAGAAAAGGGTCCTTGCCTCTTCCGTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTAATTTTCTCCATGAAGAAGCTCAAAGGCCCATAATCTATCGCGATTTCAAGACATCTAATATTCTACTAGATGCGGAATACAATGCGAAGCTCTCTGATTTTGGTCTTGCCAAAGATGCTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTTATGGGAACATATGGTTATGCAGCTCCCGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTCGGAGTAGTGCTACTTGAAATGCTCACTGGCAGGCGATCCATCGATAAGAATAGACCAAATGGGGAACACAATCTTGTGGAGTGGACAAGACCTCTACTTGTAGACCGGAGGAAATTCTTCCGAATAATTGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGGCTCAGAAGGCTGCCCAGCTGGCTGCTCAATGCCTTTGCCGTGATCCGAAATCCAGACCTATGATGAGTGAAGTTGTTCAAGCTCTAAAGCCTTTGCAAAACCTCAAGGATATGGCTATCTCTTCTTATCACTTCCAGGTTGTGCGTGTAGATCGTACCATGTCCATGCCAAATTCTAAAAATGGTATGCAAACACAGTTAGCATCATCTTTATCGAGGAAGGGTCAACCTGTAAGGATCTTGTCTAGTCCAAATGGTCCACATGCTTCTCCTTATCATCATTATGTCAAGTCACCAAAACCTAGTGGATGA 1434 0.4344 MGFKNNAIQAGSLDVGKSKGRMEKDSDEKKIGCCGKFSLIGSCIPSRSKVDNSISGTSAHSVEKTPAREKSKKEASAPPESSTTTSNAESIPSTPKVSEELKVSSRLRKFTFNELKSATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELNILGDLVHQNLVKLVGFCIEDHQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLNFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDAPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWTRPLLVDRRKFFRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSEVVQALKPLQNLKDMAISSYHFQVVRVDRTMSMPNSKNGMQTQLASSLSRKGQPVRILSSPNGPHASPYHHYVKSPKPSG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3566g00049 477 MobiDBLite consensus disorder prediction 430 477 - -
Gabi3566g00049 477 FunFam Probable serine/threonine-protein kinase PBL8 208 422 - -
Gabi3566g00049 477 MobiDBLite consensus disorder prediction 1 28 - -
Gabi3566g00049 477 PANTHER OS01G0588500 PROTEIN-RELATED 80 407 - -
Gabi3566g00049 477 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
Gabi3566g00049 477 MobiDBLite consensus disorder prediction 77 98 - -
Gabi3566g00049 477 MobiDBLite consensus disorder prediction 430 453 - -
Gabi3566g00049 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Gabi3566g00049 477 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Gabi3566g00049 477 Gene3D Transferase(Phosphotransferase) domain 1 208 425 - -
Gabi3566g00049 477 MobiDBLite consensus disorder prediction 40 98 - -
Gabi3566g00049 477 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Gabi3566g00049 477 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3566g00049 477 CDD STKc_IRAK 128 406 - -
Gabi3566g00049 477 FunFam Serine/threonine-protein kinase BIK1 89 207 - -
Gabi3566g00049 477 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3566g00049 477 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3566g00049 Gabi-Chr3566 411827 417186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3566g00049 83 419 Glycoside Hydrolase AT3G07070 50.716 4.45e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3566g00049 Pkinase 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3566g00049 - - gmx:100305393 844.728