Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3566g00039 ATGGGTGAGAAAGATGATGTGTTGGGGTTGGGGTTGAGTTTGAGTTTGACCTTGGGAGGATGTGGAGTCAATCACATGCAGAAGCCCCGACAACGTGTTCCTATGAATCAAGATAGGAGTTCCTCGAATTATTTGTTTCAGTTATCTGATCGGAGCTCCGAGATGGGGTCGTTCCTCCGAGGAACCGACGTGAATTCAGCGCCGCCGTATACGGCGGCGGATTGTGACGACGACAACGGTGTTTCCTCACCGAACAGCACGATATCGAGCATCAGTGGCGGCAAGCGGAGCGAGAGAGACGACGACAATGCCGCCCCTGCAGCGGAGAGGATGTCGTGTTCGCCGGGGATTGAAGAAGAGGACGGCGGCGGTGACGCCGGTAGGAAGAAGCTGAGGCTGACGAAGGAACAGTCCACGGTGCTGGAAGAAACGTTCAAGGAGCATAACACGCTGAATCCGAAACGAAAGCAAGCATTGGCAAAGGAGTTGAATCTGAGACCTAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGAGCGAGGACCAAGTCGAAACAGACTGAAGTGGATTATGAATACTTGAAGAGATGTTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTTCAAGAGCTAAGGGGATTGAAATTATCCCCTCAAATGTACATGCGTATGAAACCTCCCACCACTCTTACAATGTGCCCTTCATGTGAACGTGTCACTGTCTCATCTGCATCATCATCATCATCTTCTTCTTCTGCCACTCTTCACTCGGTGGTTGCACCAAGTAATGGTAACCTCTTGGGTCTGAACATTCGGCAGCCAGTGCCTGTGAACCCTTGGCCATTTGAAGGCTCAATTCCTAAGCCATAA 879 0.5006 MGEKDDVLGLGLSLSLTLGGCGVNHMQKPRQRVPMNQDRSSSNYLFQLSDRSSEMGSFLRGTDVNSAPPYTAADCDDDNGVSSPNSTISSISGGKRSERDDDNAAPAAERMSCSPGIEEEDGGGDAGRKKLRLTKEQSTVLEETFKEHNTLNPKRKQALAKELNLRPRQVEVWFQNRRARTKSKQTEVDYEYLKRCCENLTEENRRLQKEVQELRGLKLSPQMYMRMKPPTTLTMCPSCERVTVSSASSSSSSSSATLHSVVAPSNGNLLGLNIRQPVPVNPWPFEGSIPKP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3566g00039 292 SMART halz 184 227 IPR003106 GO:0006355|GO:0043565
Gabi3566g00039 292 Pfam HD-ZIP protein N terminus 1 100 IPR006712 GO:0005634
Gabi3566g00039 292 FunFam Homeobox-leucine zipper protein 18 114 189 - -
Gabi3566g00039 292 SUPERFAMILY Homeodomain-like 115 186 IPR009057 -
Gabi3566g00039 292 Coils Coil 190 217 - -
Gabi3566g00039 292 SMART HOX_1 126 188 IPR001356 GO:0003677
Gabi3566g00039 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 257 - -
Gabi3566g00039 292 ProSiteProfiles 'Homeobox' domain profile. 124 184 IPR001356 GO:0003677
Gabi3566g00039 292 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gabi3566g00039 292 ProSitePatterns 'Homeobox' domain signature. 159 182 IPR017970 GO:0000981|GO:0006355
Gabi3566g00039 292 CDD homeodomain 128 185 IPR001356 GO:0003677
Gabi3566g00039 292 CDD bZIP 177 215 - -
Gabi3566g00039 292 Pfam Homeodomain 128 182 IPR001356 GO:0003677
Gabi3566g00039 292 Gene3D - 111 188 - -
Gabi3566g00039 292 MobiDBLite consensus disorder prediction 69 130 - -
Gabi3566g00039 292 MobiDBLite consensus disorder prediction 78 93 - -
Gabi3566g00039 292 Pfam Homeobox associated leucine zipper 184 217 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3566g00039 Gabi-Chr3566 307890 310161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3566g00039 23 241 Homeobox Transcription Factor Family AT3G60390 62.605 2.71e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3566g00039 HD-ZIP_N 6.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3566g00039 K09338 - gmx:100819624 362.459