Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3566g00034 ATGAGTCGTAGAGTGAGGAGGAAGGTGGCAAGGAAAGGTAAAGGGAATGTGGTGTTGTCCAGTTTCCCTGAAATTCAAGATGAGGTTTTGGATTTAGAACGCCAAGGAATTGTTGATTGGAGGAGCTTACCCAATGATACAGTGATTCAGTTGTTGTCATGTCTTAGTTATAGAGACCGAGCTAGCTTATCATCAACTTGTAGAACATGGAGGTTTCTTGGTAGCTCCCCGTGTTTGTGGACTTCTCTGGATCTTCGTGCCCACAGGTTTGATGCCAACATGGCATCTTCACTTGCTCCCAGGTGTGTGCATCTTCAGAAGCTTAGGTTTCGTGGGGCGGAGTCTGCTGACGCAATAATTCATCTTCGAGCAAGGAACTTGCGCGAGTTAAGTGGTGACTATTGCAGGAAGATTACTGATGCAACTCTTGCCGTAATTGCGGCTCGACATGAGTTACTTGAGAGTCTTCAGCTTGGACCAGATTTCTGTGAGAGAATTAGTAGTGATGCTATTAAAGCAATTGCACATTGTTGTCCTGGATTGAATAAACTTAGACTCTCAGGCATTAGGGACGTAAACGCTGATGCAATTAATGCCTTGGCTAAGCATTGTCCAAAGTTGACTGATATTGGATTCATTGACTGTCTGAATGTTGATGATCTTGCATTGGGAAATGTGTTATCGGTTCGCTTCCTTTCTGTTGCGGGGACATCGAATATGAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAGCTTCCTCACCTGATTGGGTTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTTACAAGATTGTTATCCTTATCACAGAATTTGAGGGTTTTGATCGCTTTGAATTGTCCTATCCTTGAAGAAGACACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTATTAATTTCCCTTCTCACTGATGTTTTTAAAGGACTAGCTTCTTTATTATTTAACAATAATACAAAGAAAGGAAAGAATGTGTTTTTGGACTGGAGGACATCAAAGAATAACGATAAGGACCTTAATGAAATTATACCCTGGCTTGAGTGGATGCTATCCCATACACTTTTACGATCTGCTGAGAGCCCTCAACAGGGTCTTGATAATTTCTGGGTTGAACAAGGTGGAGCGCTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCAACAGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTCATGCGAGATGGTGGCATACGCCTCCTTCTTGGCCTGGCAAAATCTTGGAGGGAAGGACTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATGCCAATGTGGCCAAAGCTGTTGCAGAAGAGGGCGGAATTCAGATTCTCGCTGGTTTAGCTAGGTCAATGAACAAGCTGGTGGCTGAAGAGGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGCTGCCATTGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCTTCTAGTGGAGATGGAGTTTTAGAACGTGCTGCTGGTGCATTGGCTAATTTGGCAGCTGATGACAAGTGTAGCACAGAGGTTGCGCTAGCAGGAGGTGTACATGCTCTAGTGATGCTTGCCCGTAATTGCAAATTTGAGGGAGTGCAGGAGCAGGCTGCTCGTGCATTGGCTAATTTAGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACACGCTCTCTCCATGAGGGTGTCAGGCAAGAAGCTGCTGGTGCACTTTGGAATTTGTCTTTTGATGATAGAAATCGAGAGGCCATTGCAGCTGCTGGAGGAGTTCAGGCCTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTCTGGGGATTGTCAGTTTCTGAAGCCAATAGCATTGCCATTGGACGAGAAGGAGGTGTTGCCCCTCTGATTGCACTGGCACGGTCCGAAGCAGAGGATGTTCATGAAACTGCTGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGTAATGCTCTACGAATAGTGGAGGAAGGTGGAGTTTCGGCCCTTGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCACGATTCATGGCTGCGTTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTAGTAGGCACTGCGTCAGAAAGTATTTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGGATGGCTTTGAAACACATAGAAGCTTTTGTCTTTATGTTTACTGATCCACAAGCATTTGCGGCTGCTGCAGCATCATCAGCTCCTGCAGCATTAGCACAGGTTACCGAAGGTTCTCGTATTCAAGAAGCAGGGCATCTGAGATGCAGTGGTGCTGAAATTGGAAGATTTGTTACTATGCTACGAAATCCATCATCTATACTCAAAGCTTGTGCAGCATTTGCACTCCTCCAGTTTACAATTCCCGGTGGACGACACGCAACGCACCATGCTAGCCTCATGCAGAATGCAGGAGCAGCAAGAGTTCTGCGTGGCGCAGCAGCAGCAGCTACTGCTCCACTTGAAGCAAAAATCTTTGCCAGAATTGTTCTCAGGAATCTTGAGTATCACCAGATAGACCATGCAGTGTAG 2760 0.4536 MSRRVRRKVARKGKGNVVLSSFPEIQDEVLDLERQGIVDWRSLPNDTVIQLLSCLSYRDRASLSSTCRTWRFLGSSPCLWTSLDLRAHRFDANMASSLAPRCVHLQKLRFRGAESADAIIHLRARNLRELSGDYCRKITDATLAVIAARHELLESLQLGPDFCERISSDAIKAIAHCCPGLNKLRLSGIRDVNADAINALAKHCPKLTDIGFIDCLNVDDLALGNVLSVRFLSVAGTSNMKWGVVSHLWHKLPHLIGLDVSRTDIGPSAVTRLLSLSQNLRVLIALNCPILEEDTSFSASKYKNKLLISLLTDVFKGLASLLFNNNTKKGKNVFLDWRTSKNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIQILAGLARSMNKLVAEEAAGGLWNLSVGEEHKAAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSLHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTASESISKSVSLDGARRMALKHIEAFVFMFTDPQAFAAAAASSAPAALAQVTEGSRIQEAGHLRCSGAEIGRFVTMLRNPSSILKACAAFALLQFTIPGGRHATHHASLMQNAGAARVLRGAAAAATAPLEAKIFARIVLRNLEYHQIDHAV 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3566g00034 919 SMART arm_5 590 630 IPR000225 GO:0005515
Gabi3566g00034 919 SMART arm_5 631 674 IPR000225 GO:0005515
Gabi3566g00034 919 SMART arm_5 459 499 IPR000225 GO:0005515
Gabi3566g00034 919 SMART arm_5 500 543 IPR000225 GO:0005515
Gabi3566g00034 919 SMART arm_5 675 715 IPR000225 GO:0005515
Gabi3566g00034 919 SMART arm_5 716 757 IPR000225 GO:0005515
Gabi3566g00034 919 SMART arm_5 418 458 IPR000225 GO:0005515
Gabi3566g00034 919 SMART arm_5 544 585 IPR000225 GO:0005515
Gabi3566g00034 919 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Gabi3566g00034 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 687 IPR000225 GO:0005515
Gabi3566g00034 919 SUPERFAMILY RNI-like 65 293 - -
Gabi3566g00034 919 SUPERFAMILY ARM repeat 365 745 IPR016024 -
Gabi3566g00034 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 512 IPR000225 GO:0005515
Gabi3566g00034 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 556 IPR000225 GO:0005515
Gabi3566g00034 919 PANTHER PROTEIN ARABIDILLO 1 1 916 - -
Gabi3566g00034 919 SMART LRR_CC_2 124 149 IPR006553 -
Gabi3566g00034 919 SMART LRR_CC_2 178 203 IPR006553 -
Gabi3566g00034 919 SMART LRR_CC_2 204 229 IPR006553 -
Gabi3566g00034 919 Gene3D Ribonuclease Inhibitor 33 317 IPR032675 -
Gabi3566g00034 919 Gene3D - 383 504 IPR011989 -
Gabi3566g00034 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Gabi3566g00034 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 586 IPR000225 GO:0005515
Gabi3566g00034 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Gabi3566g00034 919 FunFam Protein ARABIDILLO 2 356 503 - -
Gabi3566g00034 919 Pfam Armadillo/beta-catenin-like repeat 501 543 IPR000225 GO:0005515
Gabi3566g00034 919 Pfam Armadillo/beta-catenin-like repeat 464 498 IPR000225 GO:0005515
Gabi3566g00034 919 Pfam Armadillo/beta-catenin-like repeat 631 673 IPR000225 GO:0005515
Gabi3566g00034 919 Pfam Armadillo/beta-catenin-like repeat 593 629 IPR000225 GO:0005515
Gabi3566g00034 919 Pfam Armadillo/beta-catenin-like repeat 677 714 IPR000225 GO:0005515
Gabi3566g00034 919 Pfam Armadillo/beta-catenin-like repeat 423 457 IPR000225 GO:0005515
Gabi3566g00034 919 Pfam Armadillo/beta-catenin-like repeat 554 585 IPR000225 GO:0005515
Gabi3566g00034 919 Gene3D - 593 679 IPR011989 -
Gabi3566g00034 919 Gene3D - 680 778 IPR011989 -
Gabi3566g00034 919 Gene3D - 505 592 IPR011989 -
Gabi3566g00034 919 Pfam F-box-like 40 86 IPR001810 GO:0005515
Gabi3566g00034 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 686 728 IPR000225 GO:0005515
Gabi3566g00034 919 SMART fbox_2 43 83 IPR001810 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3566g00034 572 759 U-box Gene Family AT2G23140 35.979 5.56e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3566g00034 - - ccaj:109792060 1593.94