Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3566g00015 ATGGCTTCCACCACCATGGATTCAGAGTTCGCATATTTGGAACATATTCAACAATACCTACTTGACAATGATTCTACCATTCTTCCAAGCCCTAATGTGCTCTGCTTCGAGCGTCCCACAGCTGCAGCGGCGGCGCGTGAGGTGAACGCGCCTCCGACATGGAAGCATTTCAGGGGCGTGAGGCGCAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGAGACCCGAAGAAGAACGGCGCTAGGGTTTGGCTTGGTACTTATGTGACTGAGGAGGAAGCAGCTTTGGCTTATGACAAAGCTGCCTTCAAAATGCGTGGCCCAAAAGCCAAGCTGAATTTTCCTCACCTCATTGGCTCGGATGTGCAGCCGGAGCCGCCGGTGGCGGCTGCGGCGGCGGCGGCATGTAAGCGGAGCTTGCCGGAACCTTCTTCTTCATCTGAGGATAGTTTTGAGTCACAAGGGTCAAAGAGAAGGAAGAGCTTAGCTGATCTACTTAATAAGTTAGCCAAGAATAGAAGCCAAGCCAATGTTGTTAAAATGAGTTCAGAGGGAAATGTTGTTGAGCAATGGTTGAATGATGACTTTAATGATTGTAGTCTCATTTGGTGCTCGTAG 615 0.5089 MASTTMDSEFAYLEHIQQYLLDNDSTILPSPNVLCFERPTAAAAAREVNAPPTWKHFRGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTEEEAALAYDKAAFKMRGPKAKLNFPHLIGSDVQPEPPVAAAAAAACKRSLPEPSSSSEDSFESQGSKRRKSLADLLNKLAKNRSQANVVKMSSEGNVVEQWLNDDFNDCSLIWCS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3566g00015 204 CDD AP2 55 116 IPR001471 GO:0003700|GO:0006355
Gabi3566g00015 204 PANTHER DNA-BINDING DOMAIN 44 174 IPR044808 GO:0003700|GO:0009873
Gabi3566g00015 204 FunFam Ethylene-responsive transcription factor 2 55 115 - -
Gabi3566g00015 204 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Gabi3566g00015 204 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Gabi3566g00015 204 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Gabi3566g00015 204 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gabi3566g00015 204 PRINTS Ethylene responsive element binding protein signature 96 116 IPR001471 GO:0003700|GO:0006355
Gabi3566g00015 204 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Gabi3566g00015 204 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3566g00015 Gabi-Chr3566 152586 153200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3566g00015 56 163 AP2-EREBP Transcription Factor Family AT2G44840 61.111 8.66e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3566g00015 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3566g00015 K09286 - gmx:102663872 246.514