Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3566g00013 ATGTTGACTCCATTCGAGTTAGGAGGATCTGCTGCTGCTGCTGCTGCATCATCATCCCAGCTTGAGCTTGACTTTGAAGCAAATGCTTTACTCAATAGTGGATGGTGGAGATCATACTACGATAATAATATCTCCGAACGCTGTAATTGGACAGGTATAGTTTGCAACGACGCTGGAAGCATAACAGCAATCCAACCCCGGTACTCATATGAAAGAAGGGTTGAATTTGCAACACTCAACCTCTCTGCTTTCCAGAATTTAGAACAGCTTGAGCTCTTCGAAATTGGAATACGAGGGAGGATCCCACCAGAAATCGGTATTCTCCCTAAACTCACTTATCTCGATTTGTCCAACAATGCTCTTGAAGGTGAGATACCTCCTTCACTTGGAAATCTTAGGCAATTAGATACCCTAATCATCGCTGGCAATAGCATTAATGGCTCCATTCCTCATGAGTTGGGGTTCCTCAAAAATCTTGTTACACTAGTTCTATCTGCTAATATGATCAGTGGGAACTTGCCTATTTCGCTTACAAATCTCACTCGATTAAAAAATCTTGACATTTCCATCAATCGACTTGAAGGTGAGATGCCACCTTCACTAGGAAATCTTAGGCAATTAGAGACCCTAATCCTCGCTGACAATGACATTAATGGCTCCATTCCTCATGAGTTGGGGTTCCTCAAAAATCTTGTTACATTAGATCTTTCTAATAACACGATCAGTGGGAACATAGTATCCTTGTTCGCTGAAAGCCTTGCAATGCTAACCACTGTCGAGCTCAGTCACAACCGCATTGGTGGTGAAATGCCATCACAGCTTGGATATCTTCCAAAGTTCACCTCTTTGGATCTAAGCTACAATAATCTCACGGGAATGGTTCCCCAATATCTCCTTCATGTTGATTTCGTGGACATGTCCTACAATAATTTGAAGGGTCCAATTCCAGATGGCTTCAGACCTTATGCGCTAACAGGCAACAAGGATGTATGCAGCGATATTCCAAATTACCAATTGGCATACCAATTTCAACCTTGCTCAGCTCACAGAAAAACAAGCATGAAAGTAAAACATCATCTGCTCATAGTTCTTCCCATCCTTGTTTTTCTAATAGCCGCCCTCTTACTGCTTGTGTATCTGAAATTGCGTAAAGTACGTGCAACAAAGAACAAATATGCAAACACAGCAGCAACTGAGAATGGTGATTTCTTCTGTGTATGGAATTATGATGGAAGCATGGGATATGAAAACTTAATTAGAGCTACAGAGGACTTTGACATGAAATATTGCATTGGAACTGGAGGGTATGGGAGTGTTTACAAGGCACAATTATCTGGTGGCAAGGTTGTTGCCTTGAAAAAACTCCATGGTTTTGAAGCAGAGGTGCCGGCTTTTGATGAGAGTTTTAGAAATGAAGTGAGAGTGTTATCAGAAATAAAGCATCGACATATTGTGAAGCTTTATGGATTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAGTACATGGAGAAAGGAAGCTTGTTTGCTGTCCTGTATGATGATGTTGAGGCAGTGGAAATGGATTGGAGAAAGAGGATTAACATTGTTAAAGGCATTGCAAATGCTCTTTCATATCTTCATCATGATTGTTCTCCTCCAATAGTGCATAGAGACATAAGTAGCTGCAATGTCTTACTGAATTCAGAGTGGCAGCCCCGTGTGTCTGACTTTGGCACGGCCAGACTCCTCCAACATGAGTCATCCTATCGAACTATAGTTGCTGGAACCATTGGATACATAGCTCCGGAGCTTGCCTATAGTATGGTTGTGAATGAAAAATGTGATGTCTATAGCTTTGGAATGGTGGCACTTGAAACTTTGGTGGGAAGGCATCCTAAGGAAATACTGTCATCACTTCAATCAGCATCTACTCATGCCATCACATTATGTGAAGTACTGGATCAACGCCTTCCACAACCAGATATGGAAGTTTTACCAGACGTAGTTCGTCTTGCCATTACTGCATTTGCATGCTTAAATCCCAATCCTTGCTCTCGGCCATCAATGAACTGCGTGTCTCAACGTTTTCTAACTCAGCCAAAACCATTAACCATTCCTTTGGGTGAAATTTCATTGCAGCAGCTCATGAACGAAGATTTCAAGAATTATTTATAG 2160 0.4144 MLTPFELGGSAAAAAASSSQLELDFEANALLNSGWWRSYYDNNISERCNWTGIVCNDAGSITAIQPRYSYERRVEFATLNLSAFQNLEQLELFEIGIRGRIPPEIGILPKLTYLDLSNNALEGEIPPSLGNLRQLDTLIIAGNSINGSIPHELGFLKNLVTLVLSANMISGNLPISLTNLTRLKNLDISINRLEGEMPPSLGNLRQLETLILADNDINGSIPHELGFLKNLVTLDLSNNTISGNIVSLFAESLAMLTTVELSHNRIGGEMPSQLGYLPKFTSLDLSYNNLTGMVPQYLLHVDFVDMSYNNLKGPIPDGFRPYALTGNKDVCSDIPNYQLAYQFQPCSAHRKTSMKVKHHLLIVLPILVFLIAALLLLVYLKLRKVRATKNKYANTAATENGDFFCVWNYDGSMGYENLIRATEDFDMKYCIGTGGYGSVYKAQLSGGKVVALKKLHGFEAEVPAFDESFRNEVRVLSEIKHRHIVKLYGFCLHKRIMFLIYQYMEKGSLFAVLYDDVEAVEMDWRKRINIVKGIANALSYLHHDCSPPIVHRDISSCNVLLNSEWQPRVSDFGTARLLQHESSYRTIVAGTIGYIAPELAYSMVVNEKCDVYSFGMVALETLVGRHPKEILSSLQSASTHAITLCEVLDQRLPQPDMEVLPDVVRLAITAFACLNPNPCSRPSMNCVSQRFLTQPKPLTIPLGEISLQQLMNEDFKNYL 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3566g00013 719 PRINTS Leucine-rich repeat signature 228 241 - -
Gabi3566g00013 719 PRINTS Leucine-rich repeat signature 111 124 - -
Gabi3566g00013 719 Pfam Leucine Rich repeat 230 250 IPR001611 GO:0005515
Gabi3566g00013 719 Pfam Leucine Rich repeat 278 292 IPR001611 GO:0005515
Gabi3566g00013 719 Pfam Leucine Rich repeat 255 269 IPR001611 GO:0005515
Gabi3566g00013 719 Pfam Protein kinase domain 430 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3566g00013 719 SUPERFAMILY Protein kinase-like (PK-like) 412 690 IPR011009 -
Gabi3566g00013 719 Pfam Leucine Rich Repeat 110 132 IPR001611 GO:0005515
Gabi3566g00013 719 ProSiteProfiles Protein kinase domain profile. 425 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3566g00013 719 Gene3D Ribonuclease Inhibitor 69 353 IPR032675 -
Gabi3566g00013 719 FunFam Leucine-rich repeat receptor protein kinase EMS1 173 257 - -
Gabi3566g00013 719 SUPERFAMILY L domain-like 46 319 - -
Gabi3566g00013 719 Gene3D Transferase(Phosphotransferase) domain 1 504 696 - -
Gabi3566g00013 719 FunFam Leucine-rich repeat protein kinase family protein 389 503 - -
Gabi3566g00013 719 ProSitePatterns Protein kinases ATP-binding region signature. 431 453 IPR017441 GO:0005524
Gabi3566g00013 719 ProSitePatterns Tyrosine protein kinases specific active-site signature. 549 561 IPR008266 GO:0004672|GO:0006468
Gabi3566g00013 719 SMART LRR_typ_2 228 251 IPR003591 -
Gabi3566g00013 719 SMART LRR_typ_2 277 300 IPR003591 -
Gabi3566g00013 719 SMART LRR_typ_2 180 204 IPR003591 -
Gabi3566g00013 719 SMART LRR_typ_2 108 132 IPR003591 -
Gabi3566g00013 719 FunFam Nuclear pore complex protein NUP107 15 165 - -
Gabi3566g00013 719 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 85 692 - -
Gabi3566g00013 719 Gene3D Phosphorylase Kinase; domain 1 385 503 - -
Gabi3566g00013 719 FunFam MDIS1-interacting receptor like kinase 2 504 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3566g00013 Gabi-Chr3566 135343 140093 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3566g00013 99 597 Receptor kinase-like Gene Family AT4G08850 41.942 4.97e-121 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3566g00013 Pkinase 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3566g00013 - - aprc:113862530 809.675