Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3564g00001 ATGACCATGAAGTCTGAGTCACTGGATCATTGGAGGAATTACTTTAGCACTGCCAAGTCGTCTGATATATTCGACATCATTCATCATTCCATCATGGTGGCAGCTTCGGATTTCCCCAAGGAGTTCAAGCTGAGGAGAGATGGGATTGCTGAGAGATTGTTCTCTTGCATGTTGACGACTAAATGTTTGGGGTGTGAAAGGGTGGATCATGAAGACGTTGATGATGGGCTTGCCCTTGAAGCAGGGGCAAGTGAAGACGGCAAGGTCAACAGCATTAGAGATGGCCGTGGAGAGGTTTTGAGGATCCAAAAAGTTCTGCTTAACTTTAAAGAAGAGTCTGACTCTGTGTTATTTGAGTCATTGAGGAGGCTCCAGCTGATGGAACTCAAAGTGAATCTTCTAGAGGAAACTAAGATTGGAAAGGCTGTCATTCCTCTCCGAAAGCATGGATCAAAGGATATTAGTCAACTCGCACGAACTCTTATTGATTGCTGGAAAGAAATGGTAGATGAGTGGTGCAAGGCTTCCACTACCACAGCTATTGCAGCTTCAGAAGGCACTCCAGATTCTGTAAATCCATCTAGTGGACAATTCAAATCTGAGGCTTCCATTGAGCCATCCATCACTGCCAAGGACAGTAAGAGTCAGCAACCAAGGAAAAATGAGGTTGCTGTGAGGCTAAATAAACCAGAAACTGTTGATAATTTCCCTGTCAGACCCCCAAAATCAACTATGCAGCGAAAAAGCAATATGGAGCCAAAGATGCAGCCAAAAATAGAGAACAATACAATCCCAAAGAAGCCTCCCATGATTCAGAAAGATAAATCCAAGCTTTCAGATGAAGAAGCTGCAGTCCAAGTAAAGCTAGAGGCCACTAAGAGGAAAATTCAGGAGCGTTATCAACGAGTTGAAAATGCTAAGAGGCAGAGGACAATACAAGTTCTGGAAATAAATGATCTCCCCAAGCAAGGGAGTGGCCAACGAAATTCACATTTCAAACCTGGGAATCACAATAGGCAGTGGGCCAATGCACGAAGATAG 1041 0.44 MTMKSESLDHWRNYFSTAKSSDIFDIIHHSIMVAASDFPKEFKLRRDGIAERLFSCMLTTKCLGCERVDHEDVDDGLALEAGASEDGKVNSIRDGRGEVLRIQKVLLNFKEESDSVLFESLRRLQLMELKVNLLEETKIGKAVIPLRKHGSKDISQLARTLIDCWKEMVDEWCKASTTTAIAASEGTPDSVNPSSGQFKSEASIEPSITAKDSKSQQPRKNEVAVRLNKPETVDNFPVRPPKSTMQRKSNMEPKMQPKIENNTIPKKPPMIQKDKSKLSDEEAAVQVKLEATKRKIQERYQRVENAKRQRTIQVLEINDLPKQGSGQRNSHFKPGNHNRQWANARR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3564g00001 346 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 90 183 IPR035441 -
Gabi3564g00001 346 MobiDBLite consensus disorder prediction 242 257 - -
Gabi3564g00001 346 MobiDBLite consensus disorder prediction 184 214 - -
Gabi3564g00001 346 Pfam TFIIS helical bundle-like domain 121 169 IPR017923 -
Gabi3564g00001 346 ProSiteProfiles TFIIS N-terminal domain profile. 97 172 IPR017923 -
Gabi3564g00001 346 MobiDBLite consensus disorder prediction 184 279 - -
Gabi3564g00001 346 Coils Coil 286 309 - -
Gabi3564g00001 346 CDD TFIIS_I 98 170 - -
Gabi3564g00001 346 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 97 177 IPR035441 -
Gabi3564g00001 346 SMART TFS2_5 99 171 IPR003617 GO:0005634
Gabi3564g00001 346 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 334 IPR044805 -
Gabi3564g00001 346 MobiDBLite consensus disorder prediction 317 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3564g00001 Gabi-Chr3564 16506 18818 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gabi3564g00001 Med26 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3564g00001 - - gmx:100775579 380.563