Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3560g00037 ATGGGAAACAATAGTTTGCATCATGTCAAAGATTTCCACACAAACCCACTTCAGCTTTTGCTCTCTTTTTCTACAAATTGTGATAGAATGAGGAAATGGAGGAGTCATAAGGGTAGTTTCATTTACTTAGCATTTTTCCTGTTTCTTTTGCAAGCTATGGCTTGTATCATTCAACCTGTCTCAGGGCACATGTGGGATGGGGTGATTGTTACTCAATCTGATCATCAAGCTTTGCAGGCTATTAAGCTTGAGCTGATTGATATCAAAGGGGTTCTGAGAAGCTGGAATGATACTGGTTTAGGTGCTTGTTCAGGTGGTTGGGTTGGAATCAAATGTGTGAATGGAGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGGTTGGGTGGCCGCATCTCAGAGAAAATTGGACAGCTTCAAGCTCTTAGGAAGCTTAGTCTTCATGACAATGTTCTTGTTGGTCCTGTCCCTTGGTCTCTTGGCTTTCTTCCTAATCTTAGAGGAGTTTATCTCTTCAATAACAGGCTTTCAGGTTCTATTCCTCCTTCCATTGGTAATTGTCCATTGCTTCAATCTCTTGATATTAGTAATAATTCCCTCAATGGTAAAATCCCTTCTAATTTAGCAAACTCCACTAGGATATTCAGAATCAATTTGAGCTTTAACTCACTTTCTGGATCCATTCCTAGCAGTTTCAGTATGTCTCCTTCTCTTACTATTCTTGCCCTCCAACACAACAATCTCTCAGGATCTATTCCAAATGAACTAGGTGCACTTTCCAGGCTTAGAATTCTTGATCTATCAAACAATGTAATCAATGGCAGCTTTCCTGCTAGCTTCTCCAACCTCTCTTCTCTTGTTTCATTGAATCTAGAGAACAATCAACTTGAAAACCATATCCCAGATGCTTTGGACAGGTTACACAACCTTTCTGTGCTTAACCTGAAGAACAATAAGCTTGGTGGCCAAATCCCATCAACAATTGGAAACATCTCAAGCATTAGCCAAATTGATTTCTCTGAAAATAAATTCATGGGAAAAATTCCAGATTCCCTTACCAAACTTGCTCATCTCAGTTCATTCAATGTCTCTTACAACAATTTATCTGGTCCTGTCCCATCTCCACTTTCCAAAAGATTCAATGCTAGCTCCTTTTCAGGGAATCTTGAGCTTTGTGGGTACATCAGTTCAAAACCGTGCCCTTCACCCCCACCTCATAATCTTCCAGCTCAATCACCAAACCCTCCTTCCAAGCCACACCACCGTAAACTAAGCACCAAGGACATAATCCTCATAGTAGCAGGCATTCTCCTGTTAATTCTGCTATTACTGTGCTGCTTTTTGTTATGTTGTTTGATCAGGAGAAGAACTGCTTCAAGCAGAAAGAGTGGCAAGATGGCTAAGGCTGCAGCATCTGCTAGGAGTGTTGAGAAAGGTGCAACAACTGGTGGTGAAATTCAATCAGGAGGTGAAGCTGGAGGAAAACTAGTTCACTTTGATGGACCTTTTGTGTTTACTGCTGATGATCTTTTGTGTGCAACTGCTGAGATAATGGGGAAAAGTGCATATGGAACAGCATACAAGGCAACATTGGAGGATGGGAACCAAGTTGCTGTGAAAAGGTTGAGGGAGAAAACTACTAAAGGGCAGAAGGAGTTTGAAACTGAGGTTGCTGCACTTGGCAAAATCAGACACCCAAATCTCTTAGCCCTTAGAGCCTATTATTTAGGACCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACCAAAGGAAGCCTAGCATCATTCCTTCATGCTCGGGGACCTGAAATTGTCATTGAATGGCCAACGAGGATGAAAATAGCCATTGGAGTCACTAATGGTTTGTGTTACCTCCATAACCAAGAGAATATAATACATGGGAATCTTACATCTACCAACATACTCTTAGATGAGCAAACAAATGCACATATCACAGATTTTGGTCTTTCAAGGCTAATGACAACTTCTGCCAACACCAACATAATTGCCACTGCAGGAAGTTTAGGCTATAATGCACCAGAACTTTCAAAAACCAAGAAGCCTAACACAAAAACTGATGTTTATAGCCTTGGTGTCATTATCTTGGAACTCCTAACTGGTAAACCACCTGGGGAACCAACCAATGGCATGGATTTGCCACAATGGGTGGCATCCATAGTAAAGGAGGAATGGACTAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAACCATAGGGGATGAACTTCTTAATACATTGAAATTAGCATTGCATTGTGTGGATCCATCTCCAGCTGCTAGGCCTGAAGTTCAGCAAGTTCTACAGCAATTAGAGGAGATCAAACCAGACTTGGTTGCAGTGGATGATGAAGCTCAAGTCCAAACAACTGAATGA 2400 0.4142 MGNNSLHHVKDFHTNPLQLLLSFSTNCDRMRKWRSHKGSFIYLAFFLFLLQAMACIIQPVSGHMWDGVIVTQSDHQALQAIKLELIDIKGVLRSWNDTGLGACSGGWVGIKCVNGEVIAIQLPWRGLGGRISEKIGQLQALRKLSLHDNVLVGPVPWSLGFLPNLRGVYLFNNRLSGSIPPSIGNCPLLQSLDISNNSLNGKIPSNLANSTRIFRINLSFNSLSGSIPSSFSMSPSLTILALQHNNLSGSIPNELGALSRLRILDLSNNVINGSFPASFSNLSSLVSLNLENNQLENHIPDALDRLHNLSVLNLKNNKLGGQIPSTIGNISSISQIDFSENKFMGKIPDSLTKLAHLSSFNVSYNNLSGPVPSPLSKRFNASSFSGNLELCGYISSKPCPSPPPHNLPAQSPNPPSKPHHRKLSTKDIILIVAGILLLILLLLCCFLLCCLIRRRTASSRKSGKMAKAAASARSVEKGATTGGEIQSGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFETEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIAIGVTNGLCYLHNQENIIHGNLTSTNILLDEQTNAHITDFGLSRLMTTSANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIILELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPTIGDELLNTLKLALHCVDPSPAARPEVQQVLQQLEEIKPDLVAVDDEAQVQTTE 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3560g00037 799 Gene3D Ribonuclease Inhibitor 70 210 IPR032675 -
Gabi3560g00037 799 CDD STKc_IRAK 517 782 - -
Gabi3560g00037 799 Pfam Protein tyrosine and serine/threonine kinase 515 779 IPR001245 GO:0004672|GO:0006468
Gabi3560g00037 799 FunFam Leucine-rich repeat receptor-like kinase 74 181 - -
Gabi3560g00037 799 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 278 399 - -
Gabi3560g00037 799 Pfam Leucine rich repeat N-terminal domain 73 112 IPR013210 -
Gabi3560g00037 799 Gene3D Ribonuclease Inhibitor 275 400 IPR032675 -
Gabi3560g00037 799 PRINTS Leucine-rich repeat signature 258 271 - -
Gabi3560g00037 799 PRINTS Leucine-rich repeat signature 189 202 - -
Gabi3560g00037 799 Pfam Leucine Rich repeats (2 copies) 163 207 IPR025875 -
Gabi3560g00037 799 Pfam Leucine rich repeat 259 319 IPR001611 GO:0005515
Gabi3560g00037 799 FunFam Leucine-rich repeat receptor-like protein kinase 497 587 - -
Gabi3560g00037 799 SMART LRR_typ_2 282 305 IPR003591 -
Gabi3560g00037 799 SMART LRR_typ_2 162 186 IPR003591 -
Gabi3560g00037 799 SMART LRR_typ_2 258 281 IPR003591 -
Gabi3560g00037 799 SMART LRR_typ_2 306 330 IPR003591 -
Gabi3560g00037 799 ProSiteProfiles Protein kinase domain profile. 511 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3560g00037 799 SUPERFAMILY Protein kinase-like (PK-like) 515 785 IPR011009 -
Gabi3560g00037 799 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 209 277 - -
Gabi3560g00037 799 Gene3D Phosphorylase Kinase; domain 1 517 588 - -
Gabi3560g00037 799 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 210 782 - -
Gabi3560g00037 799 FunFam Pollen receptor-like kinase 1 588 793 - -
Gabi3560g00037 799 Gene3D Ribonuclease Inhibitor 211 274 IPR032675 -
Gabi3560g00037 799 Gene3D Transferase(Phosphotransferase) domain 1 589 797 - -
Gabi3560g00037 799 SUPERFAMILY L domain-like 122 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3560g00037 Gabi-Chr3560 449242 451960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3560g00037 63 784 Receptor kinase-like Gene Family AT3G51740 66.667 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3560g00037 PK_Tyr_Ser-Thr 8.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3560g00037 - - aip:107625805 1143.64