Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3560g00021 ATGCTGCACAACAATGCCCTACTTTTTGGTAATAGCAAGATCAGAGCAGATTCAGTTGCCTCGGAATGCCTAGAACCCCTTATATCACTGATGCAGTCTAGTTCTGAGACAACAATAGAATCTGGGATTTTTGCTTTCGAGAGATGGTTGGAAGATGAGCATCAGGCAGAGCTTGCAACAGCCTTTAATGTTGTGGATCTCCTTGTCAAGTACAGAGTTCAGTTCCCCTCTTCAATATTGACGTTCTTGCTAGAAGAGATAGGCAACGATTGCAACAATATTTGTGATCAAGGCTGCCATGTTTCGTTTGTAGACAAGGTGTATGATGTGGAGTGTGAAAGTAACCATGACAATGGTCCTGTATGCGAACATGGTGTGTGGAGAGGATCCTCCAAGCTTGTATCAATGTGCAGCCAAAAGGGTACAAAAGGAGTTAATCAAGATGCGTTGACAGTTTGGGAGGACTTTACTGGAGAAAAAGGCATGACCTTTTGTGGTGTGTTTGATGGTCATGGTCCTCTAGGACACAAGTTTGCACAGTATACACGTGACAATCTACCCTCAAAACTCTCTGCAGCAATCAAACTGTCACAACAACAAAAGGTCCTCAAACACTATGATTCTAATGCTACATACACAGGCATTAATGGTGAGGATAACCAAAACATGTCCTTTGCTTCATGGGAGGGAAGCTTTGTGAGGTCCTTCAAGGAAATGGATGAAGACCTTGCTAGAAACATTGACACTAATTATAGTGGTGGAAGCACTGCAGTAACAGTAATTAAACGGGGTGACCAGCTTATAGTTGGCAATTTGGGGGATTCTCGAGCAGTTCTTTGCACAAGAGGGGATGATGACCAGCTCATTCCTGTTCAACTTACTGTTGACTTCACCCCAGATATTCCAAGTGAAGCTTCAAGAATAATTAATTGTGGAGGTAGAGTTTTTGCTGCAGAAGAAGATCCAGGTATAAACAGATTATGGATGCCTGAAGATAATTGCCCAGGATTAGCTATGTCAAGAGCCTTTGGAGATTTTTGCCTCAAAGATTATGGCCTCACCTCAGTTCCTGATGTCTCTTCTAGAAAACTTACCAAGAAGGATGAATTTGTGGTTTTGGCTACTGATGGGGTATGGGATGTGCTAACAAACAATGAAGTAATAAAATTAGTTGCTTCAGCACCAAATAGATCCATAGCAGCCAAATTATTAGTAAAGCGTGCTACATGGGCTTGGAAAATTAAGTATCCTCGTTTCAAGGTTGATGATATTGCAGTCATATGCTTTTTTCTGAATGATCTACCTGTTTCCACTCACTACCAATCCAATGTAAGTGGGGACAATTAA 1347 0.4165 MLHNNALLFGNSKIRADSVASECLEPLISLMQSSSETTIESGIFAFERWLEDEHQAELATAFNVVDLLVKYRVQFPSSILTFLLEEIGNDCNNICDQGCHVSFVDKVYDVECESNHDNGPVCEHGVWRGSSKLVSMCSQKGTKGVNQDALTVWEDFTGEKGMTFCGVFDGHGPLGHKFAQYTRDNLPSKLSAAIKLSQQQKVLKHYDSNATYTGINGEDNQNMSFASWEGSFVRSFKEMDEDLARNIDTNYSGGSTAVTVIKRGDQLIVGNLGDSRAVLCTRGDDDQLIPVQLTVDFTPDIPSEASRIINCGGRVFAAEEDPGINRLWMPEDNCPGLAMSRAFGDFCLKDYGLTSVPDVSSRKLTKKDEFVVLATDGVWDVLTNNEVIKLVASAPNRSIAAKLLVKRATWAWKIKYPRFKVDDIAVICFFLNDLPVSTHYQSNVSGDN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3560g00021 448 SMART PP2C_4 121 429 IPR001932 -
Gabi3560g00021 448 ProSiteProfiles PPM-type phosphatase domain profile. 133 431 IPR001932 -
Gabi3560g00021 448 CDD PP2Cc 134 431 IPR001932 -
Gabi3560g00021 448 PANTHER PROTEIN PHOSPHATASE 131 429 IPR015655 GO:0004722|GO:0006470
Gabi3560g00021 448 Pfam Protein phosphatase 2C 158 403 IPR001932 -
Gabi3560g00021 448 SUPERFAMILY PP2C-like 131 434 IPR036457 -
Gabi3560g00021 448 Gene3D - 127 433 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3560g00021 Gabi-Chr3560 262236 265411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3560g00021 128 435 PP2C-type Phosphatase Gene Family AT5G01700 52.090 3.93e-109 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3560g00021 - - vun:114185420 460.299