Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3560g00016 ATGAATGATGTATTTCTTAGCTTCAGAGGGGAGGATACTCGCACCAACTTCATTAGTCATCTTTACAAGGCTCTGTATAAGAAACCAGTCAACGCATTCATTGATGATAATCTTAGAAGGGGAGAAGATGTTTGGCCTGCACTTTCCAAAGCAATCGAGGAGTCGCACATATCGGTGGTTGTTTTTTCAGAAAATTATGCATCCTCGAAGTGGTGCTTGGAAGAACTCGTCAAGATACTTGAGTGCAGAAAAGATCATGGTCAGGTTGTTATGCCTGTTTTCTACGAAACAGATCCGTCAGACATAAGGAAGCAGGCTGGCACTTACGAGACAGCGTTCGCGAAACATGAGCGAGATCTTAGGGTCGAAGACAGCGAATCGAACAAACAAAAAGTACTTAAGTGGAGAGTTGCTCTGTCTGAAGCAGCCAATATATCTGGTTGGGACTCTCGAAACCATAAGGATCCTTTTCAGTTCATCCATAACATTGTCGAAGACGTTTGGCAAAAGCTGTCCCTGATGTATCCTAATGAACTGAAAGGCCTTGTTGAAATTGATGAAAACAGTAAATCCATCGAATCATTACTGCATAATGTTCCAAGAATTGGAATTTGGGGTATGGGCGGTATAGGTAAGACAACCATAGCTAGAGATATGTTTGCCAAACACTTTCCACAATATGACAGTGCATGCTTCCTGGCAAATGTAAGAGAAGAAACAAAAAAGCCCGGTGGACTAGAATATACACGGAATAAGCTTCTATCTGAGCTACTAAAGGAACCAATTACAACATCTCATGTGACTGGATCAACATTCATTAAGAGGAGGCTCAGTAGCAAAAAAGTTTTCATTGTACTTGATGATGTGGATAGTTCTGATCAATTAGAATATTTGTGTAGAGATCTAGATGACCTTGGACCAGATAGTAGACTCATTATAACAACAAGAAATAGGCATCTGCTTTGTGGAAGTGTTAATGAGATATATGAGGTCACGATATGGAAGTTTCCAGAATCTATGAAGCTTTTCTGCTTAAAAGCTTTCGGGCAAAACCATCCTCTAAAGGGTTATGAGCATCTTTCGGTAAGGGCAGTTGAATATGCTCGGGGCCTTCCATTAGCTCTTGAAGTTTTGGGTTCATATCTTCGTTCGAAAAGTATTAGATCTTGGGAAAGTACTTTGAGAGAATTCAAGAAGTATCCTGATGAGAAAATTCAAAACTTGTTGAAAGTGAGCTATGATGGATTAGATGGTCTAGAGAAGATGATATTTCAAGACATTGCATTTTTTTTCATAGGAGAAAAGAAAGATCATGTCATAAGGATACTAGATGCATGTGGTTTCGAAGCAAGTAGTAGAATAGAAGTACTTGAAGACAAAGCTTTGATAACTATTTCAAATAGCGATAGAATACAAATGCATGACTTGCTACAAAAAATGGCTTTGGAAATATTACGTGAAGATCGTAGCCGAAACCCTGCAAGACGTAGCCAATTGTGGGATGCTCGTGAAGTAATAGAACAAAACAAGAGTACTGATATAATTCAAGGCATAATATTAGATTTGTCTGAGTTTTTGTTGAGTCGCTCAGTTTGTGAGAGTTTATATGAAGATCATCATTCTGTTTTATCCGCCAATACACTTAATACTTTGAAACTGTATGTTGTGTGGACTGGATACCCTTGTAAATCTCTTCCACCACCACCTTTTTATGCGCTCGTTGAGATTCGCATGCCGCACAGCAACGTTAAACAACTGTGGCAGGGGATACAGGAATTTGGTAATTTGAAGGGAATCGACCTAAGTGAATGCAAACTGCTTGTAAAGCTTCCTGATTTGTCTAAGGAATCAAGACTTAAATGGATGAATCTCTCTGGTTGTGAGAGTTTGTGTGATCTTCATGATACTGTTTTATCTGCCAATACACTTAGTACTTTAATACTGGATAGGTGTATAAATCTTGAGAGTGTTAATGGCAAGAAGAATTTAAAATCTCTGGTGAAAATCAGTGTCAATGACTGCTTAAGTCTCAAGGAATTTGCAGTGTCTTCGAATTTAATTGAAAACTTGGATTTAAGCAATACAGGAATCCAAAGATTGGACACATCAATTGGTCTTCTACAGAATCTTAAGTGGCTTAATGTGGAGGGTTTAAGACTCACGCATCTTCCAAAGGAGTTATCTTGCCTGAAATCTCTTAAGGTGCTGAAGCTTTCTTACAAGGGACCATCAATTGACAAAAAGCAGCTAAATTCCCTGTTTGATGGCTTACGATCTCTACAAATACTATATCTGAAGGACTGTAGTAACTTGTTTGAACTCCCTGACAACATCCGCGTCTTATCACAATTACAGGAATTAAGGCTTGATGGAAGCAATGTGATAAGGTTGCCTGCAAGCATCATGCATCTCTCAGAGCTAGAAATTCTGTCATTAGAGAATTGCAGGAAGCTTCGGTCTCTGCCAGAGCTTCCACCCTCCATCAAACAGTTATATGCCATTAATTGCACGTCATTGGTGTCTGTGTCAAATTTAAAGACTTTGGCAACAAAGATGATAGGAAAGGCCAAAAACATTTCATTCAAAAACAGCTTGAAATTGGATGTACATTCACTAAAACGTATTGTGGAAAGCCTCCATTTAACAATGATGAGTGCAGCATTTCACAATGTGTTAGTAAGAAGACTCCCTGTGGCCGAACACTACTACAATTATACCAGTGTAGAGGTTTGTTTACCAGGAAGCACAGTCCCAAGGCGGTTCAAATATCGAACAAAAGAGTCCTCCATTACCATTGAACTTCCTAGCCGTTCCAACTTGCAGGGCTTTATTTACTCAATGGTTCTTTCTCCAGCCGGTGGAATGAAGGATGGCACTAAATTAAAATGTCAATGCCAATTGCCAGACACTGATTTCTCCATTGTGACATGGCTAAATACTGATATCACGGAATTGAACTCCGATTATGTTTATGTATGGTATGATCCATTCCATTGTGACAGCATTCTCAAATTTTATGAACCAAAGGTTCGTTTTGACTTCTGTGTTGCAAATAATAAGGGAGAGGTTGATGGTTCGATCTGTATCAAAGAGTGTGGAGTATGCCTCATAAGTGTTTCAGACTCACAGTGTGTTTTACCCAAATTGGACTTGGATACAGATAAGAGAAAGGCCTTGGAGAAGGGATTAGAGTTGGAAACAGCGCTTATCTTAAGCTTGACATCAATTGAAAGATCTGATGAGAAGGAAATCAAAAGACCGAGTGAACAGTCTTCTAGTGATGATACAATTGTCATAGAACCAAAGTCAGTCACGGTTGAACTCAAATCAGCTGAAGAATACAATGGGAGTAAATACCATTTTTCTGATGTAAAAGAGAGCGTCGGATCTACTCACAAGAAAACCATGACCGGTGGAGGAAGTAATAGACCAAGTCCGACAAGGAAAAGGAAATGGCTGGTTTTTGGAGAATCGAATTCAGAGTTCCGTCAAAGCCAAAAGGCTCTCGGATATGCTGACAAAGAAACCAAAACTTCTCCAGGAAGAGGTTGTGAGAAGAATACCAAAGAGTCTACAAAAGCTGTTCCTGCATCTTACACAACTGATCCTTCTTTTGGCCAGTACTTCAACCGAAGAAACAGTTCAACTGAGGACCAACAATGTAACATGGAGGAAGAGAAAAATTACTCTGACCTCTCTTTCAAAATCCAAACAAAGTGCATGCTTCTCTATCAATCTTCCACAAGCATGTTTCAAGAAGAGCTACTACAAATGTCTAACCCGAGGTTGTCCAGTGAGAAAACATGTTGA 3810 0.3937 MNDVFLSFRGEDTRTNFISHLYKALYKKPVNAFIDDNLRRGEDVWPALSKAIEESHISVVVFSENYASSKWCLEELVKILECRKDHGQVVMPVFYETDPSDIRKQAGTYETAFAKHERDLRVEDSESNKQKVLKWRVALSEAANISGWDSRNHKDPFQFIHNIVEDVWQKLSLMYPNELKGLVEIDENSKSIESLLHNVPRIGIWGMGGIGKTTIARDMFAKHFPQYDSACFLANVREETKKPGGLEYTRNKLLSELLKEPITTSHVTGSTFIKRRLSSKKVFIVLDDVDSSDQLEYLCRDLDDLGPDSRLIITTRNRHLLCGSVNEIYEVTIWKFPESMKLFCLKAFGQNHPLKGYEHLSVRAVEYARGLPLALEVLGSYLRSKSIRSWESTLREFKKYPDEKIQNLLKVSYDGLDGLEKMIFQDIAFFFIGEKKDHVIRILDACGFEASSRIEVLEDKALITISNSDRIQMHDLLQKMALEILREDRSRNPARRSQLWDAREVIEQNKSTDIIQGIILDLSEFLLSRSVCESLYEDHHSVLSANTLNTLKLYVVWTGYPCKSLPPPPFYALVEIRMPHSNVKQLWQGIQEFGNLKGIDLSECKLLVKLPDLSKESRLKWMNLSGCESLCDLHDTVLSANTLSTLILDRCINLESVNGKKNLKSLVKISVNDCLSLKEFAVSSNLIENLDLSNTGIQRLDTSIGLLQNLKWLNVEGLRLTHLPKELSCLKSLKVLKLSYKGPSIDKKQLNSLFDGLRSLQILYLKDCSNLFELPDNIRVLSQLQELRLDGSNVIRLPASIMHLSELEILSLENCRKLRSLPELPPSIKQLYAINCTSLVSVSNLKTLATKMIGKAKNISFKNSLKLDVHSLKRIVESLHLTMMSAAFHNVLVRRLPVAEHYYNYTSVEVCLPGSTVPRRFKYRTKESSITIELPSRSNLQGFIYSMVLSPAGGMKDGTKLKCQCQLPDTDFSIVTWLNTDITELNSDYVYVWYDPFHCDSILKFYEPKVRFDFCVANNKGEVDGSICIKECGVCLISVSDSQCVLPKLDLDTDKRKALEKGLELETALILSLTSIERSDEKEIKRPSEQSSSDDTIVIEPKSVTVELKSAEEYNGSKYHFSDVKESVGSTHKKTMTGGGSNRPSPTRKRKWLVFGESNSEFRQSQKALGYADKETKTSPGRGCEKNTKESTKAVPASYTTDPSFGQYFNRRNSSTEDQQCNMEEEKNYSDLSFKIQTKCMLLYQSSTSMFQEELLQMSNPRLSSEKTC 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3560g00016 1269 Gene3D - 1 170 IPR035897 -
Gabi3560g00016 1269 ProSiteProfiles TIR domain profile. 1 171 IPR000157 GO:0007165
Gabi3560g00016 1269 MobiDBLite consensus disorder prediction 1191 1217 - -
Gabi3560g00016 1269 Pfam Leucine Rich Repeat 573 591 IPR011713 -
Gabi3560g00016 1269 SMART till_3 1 145 IPR000157 GO:0007165
Gabi3560g00016 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 427 IPR027417 -
Gabi3560g00016 1269 Pfam TIR domain 3 181 IPR000157 GO:0007165
Gabi3560g00016 1269 Pfam NB-ARC domain 201 410 IPR002182 GO:0043531
Gabi3560g00016 1269 Gene3D - 336 417 IPR042197 -
Gabi3560g00016 1269 Gene3D Ribonuclease Inhibitor 518 685 IPR032675 -
Gabi3560g00016 1269 Gene3D Ribonuclease Inhibitor 686 877 IPR032675 -
Gabi3560g00016 1269 SUPERFAMILY L domain-like 472 838 - -
Gabi3560g00016 1269 Gene3D - 171 327 IPR027417 -
Gabi3560g00016 1269 PRINTS Disease resistance protein signature 368 382 - -
Gabi3560g00016 1269 PRINTS Disease resistance protein signature 201 216 - -
Gabi3560g00016 1269 PRINTS Disease resistance protein signature 802 818 - -
Gabi3560g00016 1269 PRINTS Disease resistance protein signature 276 290 - -
Gabi3560g00016 1269 MobiDBLite consensus disorder prediction 1125 1148 - -
Gabi3560g00016 1269 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 680 IPR044974 GO:0006952
Gabi3560g00016 1269 MobiDBLite consensus disorder prediction 1172 1219 - -
Gabi3560g00016 1269 FunFam Disease resistance protein (TIR-NBS-LRR class) 336 417 - -
Gabi3560g00016 1269 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 148 IPR035897 -
Gabi3560g00016 1269 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3560g00016 Gabi-Chr3560 210409 221811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3560g00016 734 852 WRKY Transcription Factor Family AT4G12020 31.933 5.99e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3560g00016 - - cam:101515491 1264.6