Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3560g00015 ATGAATGATGTATTTCTTAGCTTCAGAGGGGAGGATACTCGCACCAACTTCATTAGTCATCTTTACAAGGCTCTGTATAAGAAACCAGTCAACGCATTCATTGATGATAATCTTAGAAGGGGAGAAGATGTTTGGCCTGCACTTTCCAAAGCAATCGAGGAGTCGCACATATCGGTGGTTGTTTTTTCAGAAAATTATGCATCCTCGAAGTGGTGCTTGGAAGAACTCGTCAAGATACTTGAGTGCAGAAAAGATCATGGTCAGGTTGTTATGCCTGTTTTCTACGAAACAGATCCGTCAGACATAAGGAAGCAGGCTGGCACTTACGAGACAGCGTTCGCGAAACATGAGCGAGATCTTAGGGTCGAAGACAGCGAATCGAACAAACAAAAAGTACTTAAGTGGAGAGTTGCTCTGTCTGAAGCAGCCAATATATCTGGTTGGGACTCTCGAAACCATAAGGATCCTTTTCAGTTCATCCATAACATTGTCGAAGACGTTTGGCAAAAGCTGTCCCTGATGTATCCTAATGAACTGAAAGGCCTTGTTGAAATTGATGAAAACAGTAAATCCATCGAATCATTACTGCATAATGTTCCAAGAATTGGAATTTGGGGTATGGGCGGTATAGGTAAGACAACCATAGCTAGAGATATGTTTGCCAAACACTTTCCACAATATGACAGTGCATGCTTCCTGGCAAATGTAAGAGAAGAAACAAAAAAGCCCGGTGGACTAGAATATACACGGAATAAGCTTCTATCTGAGCTACTAAAGGAACCAATTACAACATCTCATGTGACTGGATCAACATTCATTAAGAGGAGGCTCAGTAGCAAAAAAGTTTTCATTGTACTTGATGATGTGGATAGTTCTGATCAATTAGAATATTTGTGTAGAGATCTAGATGACCTTGGACCAGATAGTAGACTCATTATAACAACAAGAAATAGGCATCTGCTTTGTGGAAGTGTTAATGAGATATATGAGGTCACGATATGGAAGTTTCCAGAATCTATGAAGCTTTTCTGCTTAAAAGCTTTCGGGCAAAACCATCCTCTAAAGGGTTATGAGCATCTTTCGGTAAGGGCAGTTGAATATGCTCGGGGCCTTCCATTAGCTCTTGAAGTTTTGGGTTCATATCTTCGTTCGAAAAGTATTAGATCTTGGGAAAGTACTTTGAGAGAATTCAAGAAGTATCCTGATGAGAAAATTCAAAACTTGTTGAAAGTGAGCTATGATGGATTAGATGGTCTAGAGAAGATGATATTTCAAGACATTGCATTTTTTTTCATAGGAGAAAAGAAAGATCATGTCATAAGGATACTAGATGCATGTGGTTTCGAAGCAAGTAGTAGAATAGAAGTACTTGAAGACAAAGCTTTGATAACTATTTCAAATAGCGATAGAATACAAATGCATGACTTGCTACAAAAAATGGCTTTGGAAATATTACGTGAAGATCGTAGCCGAAACCCTGCAAGACGTAGCCAATTGTGGGATGCTCGTGAAGTAATAGAACAAAACAAGAGTACTGATATAATTCAAGGCATAATATTAGATTTGTCTGAGTTTTTGTTGAGTCGCTCAGTTTGTGAGAGTTTATATGAAGATCATCATTCTGTTTTATCCGCCAATACACTTAATACTTTGAAACTGTATGTTGTGTGGACTGGATACCCTTGTAAATCTCTTCCACCACCACCTTTTTATGCGCTCGTTGAGATTCGCATGCCGCACAGCAACGTTAAACAACTGTGGCAGGGGATACAGGAATTTGGTAATTTGAAGGGAATCGACCTAAGTGAATGCAAACTGCTTGTAAAGCTTCCTGATTTGTCTAAGGAATCAAGACTTAAATGGATGAATCTCTCTGGTTGTGAGAGTTTGTGTGATCTTCATGATACTGTTTTATCTGCCAATACACTTAGTACTTTAATACTGGATAGGTGTATAAATCTTGAGAGTGTTAATGGCAAGAAGAATTTAAAATCTCTGGTGAAAATCAGTGTCAATGACTGCTTAAGTCTCAAGGAATTTGCAGTGTCTTCGAATTTAATTGAAAACTTGGATTTAAGCAATACAGGAATCCAAAGATTGGACACATCAATTGGTCTTCTACAGAATCTTAAGTGGCTTAATGTGGAGGGTTTAAGACTCACGCATCTTCCAAAGGAGTTATCTTGCCTGAAATCTCTTAAGGTGCTGAAGCTTTCTTACAAGGGACCATCAATTGACAAAAAGCAGCTAAATTCCCTGTTTGATGGCTTACGATCTCTACAAATACTATATCTGAAGGACTGTAGTAACTTGTTTGAACTCCCTGACAACATCCGCGTCTTATCACAATTACAGGAATTAAGGCTTGATGGAAGCAATGTGATAAGGTTGCCTGCAAGCATCATGCATCTCTCAGAGCTAGAAATTCTGTCATTAGAGAATTGCAGGAAGCTTCGGTCTCTGCCAGAGCTTCCACCCTCCATCAAACAGTTATATGCCATTAATTGCACGTCATTGGTGTCTGTGTCAAATTTAAAGACTTTGGCAACAAAGATGATAGGAAAGGCCAAAAACATTTCATTCAAAAACAGCTTGAAATTGGATGTACATTCACTAAAACGTATTGTGGAAAGCCTCCATTTAACAATGATGAGTGCAGCATTTCACAATGTGTTAGTAAGAAGACTCCCTGTGGCCGAACACTACTACAATTATACCAGTGTAGAGGTTTGTTTACCAGGAAGCACAGTCCCAAGGCGGTTCAAATATCGAACAAAAGAGTCCTCCATTACCATTGAACTTCCTAGCCGTTCCAACTTGCAGGGCTTTATTTACTCAATGGTTCTTTCTCCAGCCGGTGGAATGAAGGATGGCACTAAATTAAAATGTCAATGCCAATTGCCAGACACTGATTTCTCCATTGTGACATGGCTAAATACTGATATCACGGAATTGAACTCCGATTATGTTTATGTATGGTATGATCCATTCCATTGTGACAGCATTCTCAAATTTTATGAACCAAAGGTTCGTTTTGACTTCTGTGTTGCAAATAATAAGGGAGAGGTTGATGGTTCGATCTGTATCAAAGAGTGTGGAGTATGCCTCATAAGTGTTTCAGACTCACAGTGTGTTTTACCCAAATTGGACTTGGATACAGATAAGAGAAAGGCCTTGGAGAAGGGATTAGAGTTGGAAACAGCGCTTATCTTAAGCTTGACATCAATTGAAAGATCTGATGAGAAGGAAATCAAAAGACCGAGTGAACAGTCTTCTAGTGATGATACAATTGTCATAGAACCAAAGTCAGTCACGGTTGAACTCAAATCAGCTGAAGAATACAATGGGAGTAAATACCATTTTTCTGATGTAAAAGAGAGCGTCGGATCTACTCACAAGAAAACCATGACCGGTGGAGGAAGTAATAGACCAAGTCCGACAAGGAAAAGGAAATGGCTGGTTTTTGGAGAATCGAATTCAGAGTTCCGTCAAAGCCAAAAGGCTCTCGGATATGCTGACAAAGAAACCAAAACTTCTCCAGGAAGAGGTTGTGAGAAGAATACCAAAGAGTCTACAAAAGCTGTTCCTGCATCTTACACAACTGATCCTTCTTTTGGCCAGTACTTCAACCGAAGAAACAGTTCAACTGAGGACCAACAATGTAACATGGAGGAAGAGAAAAATTACTCTGACCTCTCTTTCAAAATCCAAACAAAGTGCATGCTTCTCTATCAATCTTCCACAAGCATGTTTCAAGAAAAGGAGCTAGTAAAGAAACGGGACACATTGATATTCAATGAAATTGCAAAGCAAATCGATTTTTCATCTGAGAGGAAAGCAACCAAATCTGAATATCCATCCACTCAGCAATTATTCTCAGAAATGGCCACAACCAAACCTGAAATACAAAGTAATTATTCCACGAACTATGGTTCTGATTATTGCAGGAAGGAAGGGAATCAAAATGATGGCTACTCCTATTCCACAAGAATAGGAACTGTTAAGGAACCTAGAGTTGTGATTCAAACTACAAGCGAAATCGATATTCTTGATGATGGCTATAGTTGGAGAAAATATGGAACGAAAGTAGTTAAAGGAAACCCAAAGCCAAGGAGCTACTACAAATGTCTAACCCGAGGTTGTCCAGTGAGAAAACATGTTGAGCGAGCTACACATGATATGAACGCTGTAATCACAACCTATGAAGGGAAACACAACCATGATATACCTATAGGATGA 4239 0.3921 MNDVFLSFRGEDTRTNFISHLYKALYKKPVNAFIDDNLRRGEDVWPALSKAIEESHISVVVFSENYASSKWCLEELVKILECRKDHGQVVMPVFYETDPSDIRKQAGTYETAFAKHERDLRVEDSESNKQKVLKWRVALSEAANISGWDSRNHKDPFQFIHNIVEDVWQKLSLMYPNELKGLVEIDENSKSIESLLHNVPRIGIWGMGGIGKTTIARDMFAKHFPQYDSACFLANVREETKKPGGLEYTRNKLLSELLKEPITTSHVTGSTFIKRRLSSKKVFIVLDDVDSSDQLEYLCRDLDDLGPDSRLIITTRNRHLLCGSVNEIYEVTIWKFPESMKLFCLKAFGQNHPLKGYEHLSVRAVEYARGLPLALEVLGSYLRSKSIRSWESTLREFKKYPDEKIQNLLKVSYDGLDGLEKMIFQDIAFFFIGEKKDHVIRILDACGFEASSRIEVLEDKALITISNSDRIQMHDLLQKMALEILREDRSRNPARRSQLWDAREVIEQNKSTDIIQGIILDLSEFLLSRSVCESLYEDHHSVLSANTLNTLKLYVVWTGYPCKSLPPPPFYALVEIRMPHSNVKQLWQGIQEFGNLKGIDLSECKLLVKLPDLSKESRLKWMNLSGCESLCDLHDTVLSANTLSTLILDRCINLESVNGKKNLKSLVKISVNDCLSLKEFAVSSNLIENLDLSNTGIQRLDTSIGLLQNLKWLNVEGLRLTHLPKELSCLKSLKVLKLSYKGPSIDKKQLNSLFDGLRSLQILYLKDCSNLFELPDNIRVLSQLQELRLDGSNVIRLPASIMHLSELEILSLENCRKLRSLPELPPSIKQLYAINCTSLVSVSNLKTLATKMIGKAKNISFKNSLKLDVHSLKRIVESLHLTMMSAAFHNVLVRRLPVAEHYYNYTSVEVCLPGSTVPRRFKYRTKESSITIELPSRSNLQGFIYSMVLSPAGGMKDGTKLKCQCQLPDTDFSIVTWLNTDITELNSDYVYVWYDPFHCDSILKFYEPKVRFDFCVANNKGEVDGSICIKECGVCLISVSDSQCVLPKLDLDTDKRKALEKGLELETALILSLTSIERSDEKEIKRPSEQSSSDDTIVIEPKSVTVELKSAEEYNGSKYHFSDVKESVGSTHKKTMTGGGSNRPSPTRKRKWLVFGESNSEFRQSQKALGYADKETKTSPGRGCEKNTKESTKAVPASYTTDPSFGQYFNRRNSSTEDQQCNMEEEKNYSDLSFKIQTKCMLLYQSSTSMFQEKELVKKRDTLIFNEIAKQIDFSSERKATKSEYPSTQQLFSEMATTKPEIQSNYSTNYGSDYCRKEGNQNDGYSYSTRIGTVKEPRVVIQTTSEIDILDDGYSWRKYGTKVVKGNPKPRSYYKCLTRGCPVRKHVERATHDMNAVITTYEGKHNHDIPIG 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3560g00015 1412 Pfam NB-ARC domain 202 410 IPR002182 GO:0043531
Gabi3560g00015 1412 SUPERFAMILY WRKY DNA-binding domain 1342 1410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00015 1412 Gene3D - 336 417 IPR042197 -
Gabi3560g00015 1412 ProSiteProfiles WRKY domain profile. 1345 1410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00015 1412 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 427 IPR027417 -
Gabi3560g00015 1412 PRINTS Disease resistance protein signature 368 382 - -
Gabi3560g00015 1412 PRINTS Disease resistance protein signature 802 818 - -
Gabi3560g00015 1412 PRINTS Disease resistance protein signature 201 216 - -
Gabi3560g00015 1412 PRINTS Disease resistance protein signature 276 290 - -
Gabi3560g00015 1412 Pfam WRKY DNA -binding domain 1351 1407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00015 1412 Gene3D - 171 327 IPR027417 -
Gabi3560g00015 1412 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 148 IPR035897 -
Gabi3560g00015 1412 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 680 IPR044974 GO:0006952
Gabi3560g00015 1412 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 173 - -
Gabi3560g00015 1412 Gene3D WRKY domain 1335 1411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00015 1412 MobiDBLite consensus disorder prediction 1125 1148 - -
Gabi3560g00015 1412 SUPERFAMILY L domain-like 472 838 - -
Gabi3560g00015 1412 ProSiteProfiles TIR domain profile. 1 171 IPR000157 GO:0007165
Gabi3560g00015 1412 MobiDBLite consensus disorder prediction 1191 1217 - -
Gabi3560g00015 1412 SMART till_3 1 145 IPR000157 GO:0007165
Gabi3560g00015 1412 SMART WRKY_cls 1350 1409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00015 1412 Pfam TIR domain 3 181 IPR000157 GO:0007165
Gabi3560g00015 1412 Pfam Leucine Rich Repeat 573 591 IPR011713 -
Gabi3560g00015 1412 FunFam Disease resistance protein (TIR-NBS-LRR class) 336 417 - -
Gabi3560g00015 1412 MobiDBLite consensus disorder prediction 1172 1219 - -
Gabi3560g00015 1412 Gene3D Ribonuclease Inhibitor 518 685 IPR032675 -
Gabi3560g00015 1412 Gene3D Ribonuclease Inhibitor 686 871 IPR032675 -
Gabi3560g00015 1412 Gene3D - 1 170 IPR035897 -
Gabi3560g00015 1412 FunFam WRKY transcription factor 1338 1411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3560g00015 Gabi-Chr3560 210409 221811 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3560g00015 734 852 WRKY Transcription Factor Family AT4G12020 31.933 5.32e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3560g00015 NB-ARC 6.4e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3560g00015 - - cam:101515491 1264.6