Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3560g00013 ATGAATGATGTATTTCTTAGCTTCAGAGGGGAGGATACTCGCACCAACTTCATTAGTCATCTTTACAAGGCTCTGTATAAGAAACCAGTCAACGCATTCATTGATGATAATCTTAAAAGGGGAGAAGATGTTTGGCCTGCACTTTCCAAAGCAATCGAGGAGTCGCACATATCGGTGGTTGTTTTTTCAGAAAATTATGCATACTCGAAGTGGTGCTTGGAAGAACTCGTCAAGATACTTGAGTGCAGAAAAGATCATGGTCAGGTTGTTATGCCTGTTTTCTACGAAACAGATCCGTCAGACATAAGGAAGCAGGCTGGCACTTACGAGACAGCGTTCGCGAAACATGAGCGAGATCTTAGGGTCGAAGACAGCGAATCGAACAAACAAAAAGTACTTAAGTGGAGAGCTGCTCTGTCTGAAGCAGCCAATATATCTGGTTGGGACTCTCGAAACCATAAGGACGATTCTCAACTCATCGACAACGTTGTCAAAGATGTAACCCAAATGCTGCACCCGAGTTATCCTATTAAACTGGAAGGCATAGTTCGATCTGGAAAAAAATGTAAAAAAGTTGAATCATTAATGAAAAAACATCAAGTAATTGGAATTTGGGGTATGCCTGGAGTAGGTAAGACGACCATTGCTAAAGTCTTGTTTGCCAAATTCTTTCTCCAATATGACAATATCTGTTTCGTGGCCAATGCAAAAGAAGTTTCACTTGATAAGATTCTATCTGAGTTATTAAAGGAGGAAATTTCCGCATCTAATGTTCTTGGAACCACATTCATTACGAGGAGGCTCAGTGGTAAAAAAGTTTTTATTGTACTTGATGATGTGGATAGTTATGATCTATTAGAAGATTTACGGAGGGCATACAGTCACTTGAGTCAAGATAGCAGACTCATTATAACAACAAGAGATAAGCAATTACTTGCTCGAAGAGTTGATTATATATACAAGGTCAAGAACTGGAAAACTACGGAATCTCTGAAGCTTTTCAGCTTAGAAGCCTTCAACCAAAGCCGTCCCCAAAATGGTTACCTCCATCTCTCAAAAAGGGCAGTTGATTATGCTGGGGGCGTTCCATTCGCTCTTAAATTTTTGGGTTCATATCTTCGATCAAAAAGTATTGAATTTTGGGAAAGTACTTTGAGAAAAATCAACAATTATAACATTGTGAAAATTCAAAACTTGCTAGAAGTGAGTTATGACGAATTAGATGGTCTAGAGAAGAAGATATTTCTAGACATTGCATTTTTTTTCATAGGAAAAATGAAAGATCATGTCACAAAGATACTAGATGCCTGTGATTTCGAAGCAAGTAGTGGAATAGAAGTCCTTGAAGACAGAGCTTTGATAACTATTTCACATAGCAATATAATACAAATGCATGACTTGCTACAAAAAATGGCTTTGGAAATAGTACGCATGGAAGATGAAGAAAACCCTGAAGGACGTAGCCGATTGAGGCATAGTGAAGCTCATGATGTAATTGAAAAAAACAAGGGGACTAAAGCAATTCAAGGCATAACACTAGATTTGTCTCAGATCACAGCTTTACCTTTGCGTGCTGACACATTCACAAAGATGGAAGCCTTAAGATTTCTTAAATTCTGTAACCCCTTGGATCAGAGTTCAAGTAATACATATGTCAAGCTTCCTACAGTTCTTGAGCCATTTTGTGACAAACTGCGGTATGTTGAGTGGATTGGATACCCTTTTGAGTCTCTTCCACATCTTTTCTCTGCCAAGTTGCTTGTTGAGATTCGCATGCCGCACAGTAATGCTAAACAACTTTGGCAGGGGACACAGGAACTTGATAATTTGGAGGGAATCGACTTAAGTGAATGCAAAAAGTTTGAAAACCTTCCGGATTTGTCTAAGGCGTCAAGACTAAAATGGGTGAATCTCTCCGGTTGTGAGAGTTTACGTGATCTCCACCATTCACTTTTATCCACCGATACACTCGTTACTTTGATACTTGATAGGTGTATAAATCTTAAGAGTGTTAAAGGCAAGAAGCATTTAAAGTCTCTGCAGACAATCAGTGTCAATGGCTGCTTAAGTCTGCAGGAATTTGCAGTATCTTGGGATTTAATTGAAAACTTGGATTTAAGAAATACAGGTACAGGAATCCAGAGATTGGGCACATCGATTGGGCTTCTGCATAATTGGCCTAATCTAGAGGGTTTAAGACTCACGCATCTGAAATCTCTTAAGGAGCTGAAGCTCTCTTGCAGCGGATTAGTTATTGACAAAAAGCAGCTAAGTGACCTGTTTGATGGGTTACGATCTCTACAAATACTACATTTGAAGCAGTGTAGTTACTTGTTTGAAGTCCCTGACAACATCCGCGTCCTATCACAATTACAGGAATTAAAGCTAGATGGAAGCAATGTGATAAGCTTGCCTACAAGCATCAAGTATCTCGAAAGGCTAGAAATTCTGTCCTTAGAGAATTGTCGCAAGCTTAAGTGTCTGCCAGAGCTTCCACCATCCATCAAACAGTTAAATGCGGATAACTGCGAGTCATTGATGTTTGTGTCAAATTTAAAGGGTTTGGAGTCAGAATCAGGACGTAGCGTAACCTTGACATCAATTGAAGGATCTTATGAGAAGGAAAGCAATGGCTCGAGTGAACAGTCTTTCAGTGATGAAACAGACTCAGACTCAGAAATAGAAATGGTTGAACCAGATTCGGCTGAAGAAGGTAATGATGGGAGGAAAGAACATTATTCTAATGAGGAAGAAAGCACCAAATCTACTCGCAATAGATTGGTTAGCAAGGAAAATACCGCGGTGTCTGCTGTCAAAAGCGAACGAAATAAACCTTATGGTTTGCATGAACCTGCTGAGTTGCCGTTGGACAAAGAAAATGAATCTAAAGAAAAGTCAACAGTGGCGATTGAACTAGAATCAGTTCAAAAAGACAAAGAGAGAAGAGATCATTTTTCTCGTGTGAAAGAGAGCATCGGATCCACTCACAACGAAATGAAAACCGGACCAGGAAGAGGTATCAAGGAGAATACCACAAAGTCTACAAAAGTTGTCAAAAGCGAAGGAAATAAAGCAACGACAGCTGAACCTGGTGCCAGATTGCATGAACTTATTAAGTCACAGCCAGACAAAGAAAATGCATCTATGAACAAGTCAATCTTCATGGATGTGACCCTTTGCTTTCTTTCACGTTTTTTTGTACCACTTCACTACTTCACAACTTTTGGTGTCTCTTCATTCTTGCCTCTTGCTTGGTTGATCGAGATCTGCGAGGCTAGAGGAAAGCAAAATATAAGGGGCAGGTTAGCCTTTAAGTACTTGTCACTAGCTCAATCAAACAAAGTTGATGATTCTCGAATGATCAAGGATTGGGTTTATCCCTTAAACTTAGCTTGA 3396 0.3958 MNDVFLSFRGEDTRTNFISHLYKALYKKPVNAFIDDNLKRGEDVWPALSKAIEESHISVVVFSENYAYSKWCLEELVKILECRKDHGQVVMPVFYETDPSDIRKQAGTYETAFAKHERDLRVEDSESNKQKVLKWRAALSEAANISGWDSRNHKDDSQLIDNVVKDVTQMLHPSYPIKLEGIVRSGKKCKKVESLMKKHQVIGIWGMPGVGKTTIAKVLFAKFFLQYDNICFVANAKEVSLDKILSELLKEEISASNVLGTTFITRRLSGKKVFIVLDDVDSYDLLEDLRRAYSHLSQDSRLIITTRDKQLLARRVDYIYKVKNWKTTESLKLFSLEAFNQSRPQNGYLHLSKRAVDYAGGVPFALKFLGSYLRSKSIEFWESTLRKINNYNIVKIQNLLEVSYDELDGLEKKIFLDIAFFFIGKMKDHVTKILDACDFEASSGIEVLEDRALITISHSNIIQMHDLLQKMALEIVRMEDEENPEGRSRLRHSEAHDVIEKNKGTKAIQGITLDLSQITALPLRADTFTKMEALRFLKFCNPLDQSSSNTYVKLPTVLEPFCDKLRYVEWIGYPFESLPHLFSAKLLVEIRMPHSNAKQLWQGTQELDNLEGIDLSECKKFENLPDLSKASRLKWVNLSGCESLRDLHHSLLSTDTLVTLILDRCINLKSVKGKKHLKSLQTISVNGCLSLQEFAVSWDLIENLDLRNTGTGIQRLGTSIGLLHNWPNLEGLRLTHLKSLKELKLSCSGLVIDKKQLSDLFDGLRSLQILHLKQCSYLFEVPDNIRVLSQLQELKLDGSNVISLPTSIKYLERLEILSLENCRKLKCLPELPPSIKQLNADNCESLMFVSNLKGLESESGRSVTLTSIEGSYEKESNGSSEQSFSDETDSDSEIEMVEPDSAEEGNDGRKEHYSNEEESTKSTRNRLVSKENTAVSAVKSERNKPYGLHEPAELPLDKENESKEKSTVAIELESVQKDKERRDHFSRVKESIGSTHNEMKTGPGRGIKENTTKSTKVVKSEGNKATTAEPGARLHELIKSQPDKENASMNKSIFMDVTLCFLSRFFVPLHYFTTFGVSSFLPLAWLIEICEARGKQNIRGRLAFKYLSLAQSNKVDDSRMIKDWVYPLNLA 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3560g00013 1131 SUPERFAMILY L domain-like 464 850 - -
Gabi3560g00013 1131 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 148 IPR035897 -
Gabi3560g00013 1131 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 173 - -
Gabi3560g00013 1131 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 696 IPR044974 GO:0006952
Gabi3560g00013 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 418 IPR027417 -
Gabi3560g00013 1131 MobiDBLite consensus disorder prediction 1007 1022 - -
Gabi3560g00013 1131 SMART till_3 1 145 IPR000157 GO:0007165
Gabi3560g00013 1131 Pfam TIR domain 3 177 IPR000157 GO:0007165
Gabi3560g00013 1131 Gene3D - 168 319 IPR027417 -
Gabi3560g00013 1131 MobiDBLite consensus disorder prediction 869 954 - -
Gabi3560g00013 1131 MobiDBLite consensus disorder prediction 869 885 - -
Gabi3560g00013 1131 Gene3D - 1 167 IPR035897 -
Gabi3560g00013 1131 MobiDBLite consensus disorder prediction 886 901 - -
Gabi3560g00013 1131 Pfam Leucine Rich Repeat 587 605 IPR011713 -
Gabi3560g00013 1131 MobiDBLite consensus disorder prediction 994 1029 - -
Gabi3560g00013 1131 Gene3D Ribonuclease Inhibitor 477 705 IPR032675 -
Gabi3560g00013 1131 PRINTS Disease resistance protein signature 359 373 - -
Gabi3560g00013 1131 PRINTS Disease resistance protein signature 267 281 - -
Gabi3560g00013 1131 PRINTS Disease resistance protein signature 605 621 - -
Gabi3560g00013 1131 PRINTS Disease resistance protein signature 201 216 - -
Gabi3560g00013 1131 Pfam NB-ARC domain 195 407 IPR002182 GO:0043531
Gabi3560g00013 1131 Gene3D Ribonuclease Inhibitor 706 887 IPR032675 -
Gabi3560g00013 1131 ProSiteProfiles TIR domain profile. 1 171 IPR000157 GO:0007165
Gabi3560g00013 1131 MobiDBLite consensus disorder prediction 902 925 - -
Gabi3560g00013 1131 Gene3D - 326 408 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3560g00013 Gabi-Chr3560 155222 167798 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3560g00013 3 824 WRKY Transcription Factor Family AT4G12020 30.435 1.36e-86 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3560g00013 - - cam:101515491 1060.06