Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3560g00011 ATGTCTTTCGGTTTCACTGACCTTTCCAATAACAACAATAACATGTCCTTTGATGATAAATGGGGAACTTCTCAACGTAAAACTGATGATCATTTTGGACTTGAAGTTCAACCTTCTTCAACTTACCCTTCTTATTCTGATTTTCCTCCTGGTTTTAGCCCAACTGAGTTATTCAATTCACCTTTGTTTCTTTCTTCTCCAAATGTTCCTGCATCTTACACCACTGATCCTTCTTCTGGCCAGTACTTCAACCGAAGAAACAGTTCAACTGAGGACCAACAATGTAACATGGTGGAAGAGAAAGATTACTCTGACCTCTCTTTCCAAATCGAAACAAAGCATGTGCCTCTCTTTCAATCTTCCACAAGCATGTTTCAAGAACAGGAGCTAGTAAAGAAACAGGACACATTGGTATTCAATGAAGCTGCAAAGCAAATTGATTTTTCATCTGAGAGGAAAGCAACCAAATCTGAATATCCATCCACTCAGCACTTATTCTCAGAAATGAGCACAACCAAACCTGAAATACAAAGTAATTATTCAGCTTCTGGGTCTGGTTACTTTAACAACACTAATGCTTCTATTAGAGAACAAAGGAGAACAGAAGATGGGTACAAATGGAGGAAATATGGAGAGAAACAAGTTAAAGGAAGTGAAAATCCACGCAGTTATTACAAGTGCACACATCCAAATTGCTCAACTAAGAAGAAAGTTGAGAGGACTTTGGATGGACATATTACTGAAATTATATACAAGGGAAGTCATAGCCATCCTAAGCCCCAGTCTACTAGAAGAACAAGTTCTCAATCAATTCTTCAATCTTCTTCATCATGCAACAACTCAGGGATTTCTGATCAATCTTTGGGAGAAGAAGACTTTGAGCATTCATCACAAACGAGTTATTCTGGAGGGGATGACAATGACCTTGGACCAGAGGCCAAAAGAAGGAAGGAAGGGAATGAAAATGATGGCTATTCCTATTCCTGTGGAATAGGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGCGAAATTGATATACTTGACGATGGCTATAGGTGGAGAAAATATGGACAGAAAATAGTTAAAGGGAACCCAAATCCAAGGAGCTACTACAAATGCATAACCCAAGGTTGTCCAGTGAGAAAACATGTTGAGCGAGCTGCACATGATATGAAAGCTGTAATCACAACCTATGAAGGGAAACACAACCATGATGTTCCTATAGGACGAGGAAGTGCAAGTCAGAGCATGAACAAAACTTCGATGAACAGCAACACTAGTAATGTAACTATCCCCACCCCTATAAGGCCTTCAGTGGTGACTAATTGTTCTGGCTCAACAACTTTCACAAATTCACTTCATGGTACAAAGATACCAACATCTGGAAGTCAAGAACCTTTTCCACTGGACTTGCTACTGAGCCCTGGAAGCTTTGGATATTCAGCTTTGGATAGATCAATGAGTTCATATACCAATCCTGAACAATACTCAGATGCAGCAAACTTGGCTAAGGATGACTCATTCCTTCAGTCTTTTCTGTCAAAGAACTTTTAA 1563 0.3941 MSFGFTDLSNNNNNMSFDDKWGTSQRKTDDHFGLEVQPSSTYPSYSDFPPGFSPTELFNSPLFLSSPNVPASYTTDPSSGQYFNRRNSSTEDQQCNMVEEKDYSDLSFQIETKHVPLFQSSTSMFQEQELVKKQDTLVFNEAAKQIDFSSERKATKSEYPSTQHLFSEMSTTKPEIQSNYSASGSGYFNNTNASIREQRRTEDGYKWRKYGEKQVKGSENPRSYYKCTHPNCSTKKKVERTLDGHITEIIYKGSHSHPKPQSTRRTSSQSILQSSSSCNNSGISDQSLGEEDFEHSSQTSYSGGDDNDLGPEAKRRKEGNENDGYSYSCGIGTVKEPRVVVQTTSEIDILDDGYRWRKYGQKIVKGNPNPRSYYKCITQGCPVRKHVERAAHDMKAVITTYEGKHNHDVPIGRGSASQSMNKTSMNSNTSNVTIPTPIRPSVVTNCSGSTTFTNSLHGTKIPTSGSQEPFPLDLLLSPGSFGYSALDRSMSSYTNPEQYSDAANLAKDDSFLQSFLSKNF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3560g00011 520 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 129 429 IPR044810 GO:0003700
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 412 439 - -
Gabi3560g00011 520 ProSiteProfiles WRKY domain profile. 196 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 308 322 - -
Gabi3560g00011 520 Pfam WRKY DNA -binding domain 351 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 Pfam WRKY DNA -binding domain 202 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 SUPERFAMILY WRKY DNA-binding domain 342 410 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 ProSiteProfiles WRKY domain profile. 345 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 250 329 - -
Gabi3560g00011 520 SMART WRKY_cls 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 SMART WRKY_cls 350 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 407 439 - -
Gabi3560g00011 520 SUPERFAMILY WRKY DNA-binding domain 197 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 FunFam WRKY transcription factor 33 337 403 - -
Gabi3560g00011 520 Gene3D WRKY domain 335 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 Gene3D WRKY domain 189 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 1 28 - -
Gabi3560g00011 520 FunFam WRKY transcription factor 189 261 - -
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 256 305 - -
Gabi3560g00011 520 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3560g00011 Gabi-Chr3560 138338 141472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3560g00011 196 484 WRKY Transcription Factor Family AT2G38470 53.846 3.30e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi3560g00011 WRKY 9.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3560g00011 K13424 - gmx:100127367 659.062