Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3560g00004 ATGTTGTATTTCTTTGTCTCCTTGTCATTTCTTTCTGTGTTGTATATCTTTGTCTCCTGGTTATGTCCAAAATCGAAGGGTGTAGAGGTAAAGCCCATGTCAAACAATGCTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGCAAGGACATTCGCCGTGGTTTTCTCAGTCATTTGATTGAAGCTTTTCGTAGAAACCAAATAGATGTCTTTGTAGATGATGGACTTGAGAGAGGACATGAAATATCGTCATCACTTTCTGGAGCAATTGAAACATCATTAATTTCATTGATCATATTCTCAGAAGACTATGCTTCTTCACATTGGTGTCTGGAAGAACTTGAGAAAATAGTTGAGTGCAGAGATAAATATGGACAGACTGTAATACCTATTTTCTACAATGTAGATCCCACAAATGTGCGGCATCAAAAGGAGAGTTATGGAAATGCGCTTTCTAAACATGAAGAAAATTATAATTTGACCAAGGTGCAAACATGGAGGCATGCTTTAAACAAATCTGCTAATTTATCAGGAATTAAGTCATCAGATTTCTGGGATGATGCCAAGCTCCTTGATAAAATCATCAAAACTGTCAATCATGAATTAATGATGAGGTTGAATAAGCACCCAATTCAGTCAAAAGGACTTATTGGAATTGGCAAACCAATTGCACATTTAGAATCGTTGTTACGTCAAGATTCAAAAGACGTACGTGTTATTGGAATTTGGGGTATGGGCGGTATTGGCAAGACAACCATTGCACAAGAAGTATTGAACAAACTAAGGTTTGATTATGAAGGTTGTTGTTTTTTGGCAAACATAAGAGAAGAATCAACAAGAGGTAGAATCAAATCCTTAAAAGAGAAACTCTTTTCTACAATATTAGCAGAAGATGTAAAAATTAACATAGCAAATGAATTGCCTGGTGATATTATGACGAGGCTCGGTCGTATGAAGGTTCTCATTGTTCTAGATGACGTCAATGATCCAGATCAACTAGAAATTTTAGTTGGAGGTCATGATCGATTTGGATCCGGTAGTAGAATCATTGTAACAACTAGAGATATGCAAGTGCTTGTGGCTCACAAAATTGATGATGATGACATATACAGGGTAGGAGCATTGAAGTTTGATGAAGCACTTAAGCTTTTCAATTTGCATGCCTTCAAACAAAATCATATTGAAATGGAGTACTCTGAGCTATCAAAGAGGGTGGTCAATTATGCCAAAGGCATTCCTTTAGTTCTTAAAATTTTGGGTCATCTTCTTTGTGGAAAAGATAAGGAAGTGTGGGAAAGTCAGCTCGACAAATTTAAAAAAATGCCAAATAAGAAAGTTCATGATGTGATGAAACTGAGTTATGATGATCTAGATCGCAAAGAGCGAACGATGTTTTTAGATCTTGCATGCTTCTTTAGTGGAATGAATTTGAAAGTGGGTTACATAAAACTCTTACTGAAAGATCATGAAAGTGATAATTCAGTTGTTGTTGGGTTAGAAAGACTCAAAGACAAAGCTCTAATTATTATTTCTGAAGATAATGTTGTCTCTGTGCATGATATTATACAAGAAATGGCTTGGGAGATTGTTTGCCAGGAATCTAGTGAAGACCCAGGAAACTGCATTCATTTGGGGGATCCTAATGAAGTTTATGAAGTGTTAAAATATGATAAGGGGACTAAGGCCATTAGAAGCATAAGGGCGTTCTTGTCACAAGGCAGGAAGCTCATGTTGAGCCCTCACATATTTGCTAAGATGAGCAAACTACAATTTCTGGATTTTGAATCCCCATATGATCCATATGGCTTGGATCTTCTTACTCAAGAGCTTCAATCTTTGCCAACTGAACTAATATATCTTCGTTGGACGAATTACCCTCTGAAATCCTTGCCGGTGAAATTTTTTGCGGAAAAACTTGTTATTTTGGACTTATCAGAGAGTAGAGTGAAAAAACTTTGGGATGGAATGCAGAATCTGGTGAATTTAAAAGAAGTTATACTTAGTAGATCCCATTTTCTAAAGGAGCTGCCAGACTTTTCAAAAGCCACAAATCTTGAAGTACTTAATATCTCTTGGTGTGTTGAGTTGACTAGCGTGCATATTTTCTCTCTGCACAAGCTTGAGAAATTGGATGCAAGGTTCTGCAGTTCCCTTATCAGACTCACAAGCGATGCCCATTTAACCTCCCTCAACTATCTCAGACTTGAATACTGCGATAATCTCAGGGAATTCTCGGTGACATCAGTGAATATGATAGAACTGAATTTACAATACACTCGTTTGGATGCATTGCCCACATCCTTTGGACATCAAAGCAAGCTTGAAATCCTAGATCTTGCAGGCTGTCGCATTGAGAGCTTGCCTTCATCCATTAAAAATCTTACAAGACTGCGACATCTAAGCGTGTGTAATTGTAGGAAGCTTCGGACTCTGCCTGAGCTTTCCCCCTCCCTTGAAACTCTACTTGTCGAAGGGTGCATATCACTAGAGACTGTATTGTTCCCTTCAACAGCCACTGAACAATTCAATGAAAATAGGAGAAGGGTAGGGTTCTGGAATTGCTTGAACTTGGACAAGTATTCTCTCATGGCTATTGAGTTGAATGCGCAAATTAACGTGATGAATATAGCACAACATATATCCACTCCAGAACACGATTATGTTGAAAATTACTATGATCAAGCTACGTACGTGTACGTGTATCCAGAAAGTAGAGTTCCAGAGTGGTTGGAGTATAAGACGAAAACTGATTATGTAATTATTGATCTCTCTTCTGCTCCACCCTCCCCTCCATTAGGCTTCATTTTCTGCTTCATCATCGGAGGGGGGCAAAGATTTCAGTCATTGAAATTTAACATCATTATCAGTGATTGTGAGGGTGAGGGTATCATGGGCAGTGTCGATATGTACATGTCTTCGCAATTCATCATCACTCGCTCTGATAACGTGTGTGTGATGTACGACCAGCGCTGTTCTCGCTACCTAAATAGCAGTGCCGAAACACAGACAAGGTTTAAAATCAAGGTTACAGCAAGCTCAGGATCATGGAACCTTCTACAAATTATAGGGAATTCGGAATTTGATAAGCCGATTGCATTAGAGGGGTTCGGGGTAAGCCCAATAAGCACCCTGGCATATCGCAACTTCAGTCATCAAATGAAATTTGGGTGA 3177 0.3853 MLYFFVSLSFLSVLYIFVSWLCPKSKGVEVKPMSNNAPQIKYDVFVSFRGKDIRRGFLSHLIEAFRRNQIDVFVDDGLERGHEISSSLSGAIETSLISLIIFSEDYASSHWCLEELEKIVECRDKYGQTVIPIFYNVDPTNVRHQKESYGNALSKHEENYNLTKVQTWRHALNKSANLSGIKSSDFWDDAKLLDKIIKTVNHELMMRLNKHPIQSKGLIGIGKPIAHLESLLRQDSKDVRVIGIWGMGGIGKTTIAQEVLNKLRFDYEGCCFLANIREESTRGRIKSLKEKLFSTILAEDVKINIANELPGDIMTRLGRMKVLIVLDDVNDPDQLEILVGGHDRFGSGSRIIVTTRDMQVLVAHKIDDDDIYRVGALKFDEALKLFNLHAFKQNHIEMEYSELSKRVVNYAKGIPLVLKILGHLLCGKDKEVWESQLDKFKKMPNKKVHDVMKLSYDDLDRKERTMFLDLACFFSGMNLKVGYIKLLLKDHESDNSVVVGLERLKDKALIIISEDNVVSVHDIIQEMAWEIVCQESSEDPGNCIHLGDPNEVYEVLKYDKGTKAIRSIRAFLSQGRKLMLSPHIFAKMSKLQFLDFESPYDPYGLDLLTQELQSLPTELIYLRWTNYPLKSLPVKFFAEKLVILDLSESRVKKLWDGMQNLVNLKEVILSRSHFLKELPDFSKATNLEVLNISWCVELTSVHIFSLHKLEKLDARFCSSLIRLTSDAHLTSLNYLRLEYCDNLREFSVTSVNMIELNLQYTRLDALPTSFGHQSKLEILDLAGCRIESLPSSIKNLTRLRHLSVCNCRKLRTLPELSPSLETLLVEGCISLETVLFPSTATEQFNENRRRVGFWNCLNLDKYSLMAIELNAQINVMNIAQHISTPEHDYVENYYDQATYVYVYPESRVPEWLEYKTKTDYVIIDLSSAPPSPPLGFIFCFIIGGGQRFQSLKFNIIISDCEGEGIMGSVDMYMSSQFIITRSDNVCVMYDQRCSRYLNSSAETQTRFKIKVTASSGSWNLLQIIGNSEFDKPIALEGFGVSPISTLAYRNFSHQMKFG 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3560g00004 1058 Pfam TIR domain 41 201 IPR000157 GO:0007165
Gabi3560g00004 1058 PRINTS Disease resistance protein signature 241 256 - -
Gabi3560g00004 1058 PRINTS Disease resistance protein signature 704 720 - -
Gabi3560g00004 1058 PRINTS Disease resistance protein signature 316 330 - -
Gabi3560g00004 1058 PRINTS Disease resistance protein signature 411 425 - -
Gabi3560g00004 1058 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 180 IPR035897 -
Gabi3560g00004 1058 Gene3D - 376 460 IPR042197 -
Gabi3560g00004 1058 Pfam NB-ARC domain 229 456 IPR002182 GO:0043531
Gabi3560g00004 1058 Gene3D Ribonuclease Inhibitor 752 892 IPR032675 -
Gabi3560g00004 1058 SUPERFAMILY L domain-like 572 832 - -
Gabi3560g00004 1058 ProSiteProfiles Leucine-rich repeat profile. 775 796 IPR001611 GO:0005515
Gabi3560g00004 1058 ProSiteProfiles TIR domain profile. 40 204 IPR000157 GO:0007165
Gabi3560g00004 1058 FunFam Disease resistance protein (TIR-NBS-LRR class) 38 206 - -
Gabi3560g00004 1058 SUPERFAMILY "Winged helix" DNA-binding domain 446 536 IPR036390 -
Gabi3560g00004 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 470 IPR027417 -
Gabi3560g00004 1058 Gene3D - 39 206 IPR035897 -
Gabi3560g00004 1058 SMART till_3 41 178 IPR000157 GO:0007165
Gabi3560g00004 1058 Gene3D - 207 369 IPR027417 -
Gabi3560g00004 1058 Gene3D Ribonuclease Inhibitor 571 751 IPR032675 -
Gabi3560g00004 1058 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 835 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3560g00004 Gabi-Chr3560 64242 69005 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3560g00004 20 823 WRKY Transcription Factor Family AT4G12020 31.341 9.55e-83 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3560g00004 - - aprc:113850949 1241.48