Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00062 ATGATGTGTGACAAAGGCAGCAGCAGCAGTAGCAGCGGGGAGGGTCATTCAACTTTGCTCCATGGGAAGTACGAGCTGGGTCGGGTTTTGGGTCATGGAACATTCGCGAAGGTGTATCACGCGCGGAACTTGCAAAACGGGAAAAACGTGGCGATGAAGGTTGTTGGGAAGGAGAAAGTGATCAAGGTTGGGATGATGGAACAGATCAAGAGGGAGATCTCCGTGATGAAGATGGTAAAGCACCCAAACATCGTCGATCTTCACGAGGTTATGGCGAGCAAATCCAAGATCTACATAGCCATGGAGCTCGTTCGTGGCGGCGAGCTCTTCAACAAGGTAGCCAAAGGTCGATTGAAGGAAGATCTCGCCAGATTCTACTTTCAGCAGTTGATCTCCGCCATCGATTTCTGCCACAGCCGCGGCGTTTACCACCGCGATCTCAAGCCGGAGAACCTCCTCCTCGACGAAGACGGTAACCTAAAAGTCTCCGATTTCGGCCTCAGCACCTTCGCCGAACACCTCAGGCAAGACGGGTTGTTGCACACCACGTGCGGGACTCCGGCGTACGTGTCGCCGGAGGTTATTGCGAGGAAAGGCTACGACGGTGCCAAAGCTGATATATGGTCTTGTGGGGTCATACTTTACGTGCTTCTCGCTGGGTTCTTACCCTTTCAGGATGATAATTTGGTAGCTATGTACAAGAAGATTTACAAGGGTGACTTCAAATGTCCACCTTGGTTCTCTTTGGAAGCACGGAGGCTCATCACGAAGCTCCTCGACCCGAACCCGAATACCCGAATCTCAATCTCCAAGATCATGGACTCGTCCTGGTTCAAGAAATCGGTGCCCAAGAGCATGGTGAAGACGAAAGAAGAGCGTGAGTTTTATTTAGAGGACAAGTGCGAGAAATCGAAGCAGCCGGCGACGATGAACGCTTTCCACATAATCTCTCTCTCGGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGAGAGGAGAGGGAGGAGCTGAGATTCGCCACCGCGGGGACTCCGAGCATTGTTATATCGAGACTGGAGGAGGTGGCGAAGGCGGTGAAGTTCGACGTGAAGAGCAGCGAGACGAAGGTGAGGCTTCAGGGACAGGAACGTGGGAGGAAGGGGAAGCTGGCTATTGCGGCTGATATTTACGCCGTGACGCCGTCGTTCATGGTGGTGGAGGTGAAGAAGGACAACGGTGATACATTGGAGTATAATCAGTTCTGCAGCAAAGAGCTGCGTCCTGCTCTCAAAGATATCTTGTGGACTTCGCCTCGTTCTGAGAATTCGACACCTGCTTGA 1326 0.5226 MMCDKGSSSSSSGEGHSTLLHGKYELGRVLGHGTFAKVYHARNLQNGKNVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVDLHEVMASKSKIYIAMELVRGGELFNKVAKGRLKEDLARFYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFAEHLRQDGLLHTTCGTPAYVSPEVIARKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYKGDFKCPPWFSLEARRLITKLLDPNPNTRISISKIMDSSWFKKSVPKSMVKTKEEREFYLEDKCEKSKQPATMNAFHIISLSEGFDLSPLFEEKKREEREELRFATAGTPSIVISRLEEVAKAVKFDVKSSETKVRLQGQERGRKGKLAIAADIYAVTPSFMVVEVKKDNGDTLEYNQFCSKELRPALKDILWTSPRSENSTPA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00062 441 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00062 441 ProSitePatterns Protein kinases ATP-binding region signature. 30 57 IPR017441 GO:0005524
Gabi3558g00062 441 SUPERFAMILY Protein kinase-like (PK-like) 21 295 IPR011009 -
Gabi3558g00062 441 ProSiteProfiles Protein kinase domain profile. 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00062 441 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Gabi3558g00062 441 CDD STKc_SnRK3 23 277 - -
Gabi3558g00062 441 Pfam NAF domain 307 366 IPR004041 GO:0007165
Gabi3558g00062 441 FunFam Non-specific serine/threonine protein kinase 305 430 - -
Gabi3558g00062 441 SMART serkin_6 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00062 441 Gene3D Phosphorylase Kinase; domain 1 17 103 - -
Gabi3558g00062 441 FunFam Non-specific serine/threonine protein kinase 16 103 - -
Gabi3558g00062 441 CDD CIPK_C 311 426 - -
Gabi3558g00062 441 Gene3D Transferase(Phosphotransferase) domain 1 104 284 - -
Gabi3558g00062 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Gabi3558g00062 441 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 15 427 - -
Gabi3558g00062 441 Gene3D Kinase associated domain 1, KA1 304 431 - -
Gabi3558g00062 441 FunFam Non-specific serine/threonine protein kinase 14 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00062 Gabi-Chr3558 510820 512604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00062 1 441 CBL-interacting serine-threonine protein kinases AT4G30960 71.778 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi3558g00062 Pkinase 2.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00062 - K07198 var:108321114 733.791