Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00059 ATGCAGCCTTGTAGCAGAGAAATGCAAGGGCTTAACTCCCTCTTGAACTCTTCTCAAATTCCTCTCCACAACAACAACAACAATAATAATAATAACCAACAGCAGATCCAAATGAATCACCTCAACCACTTCGAACCCACTTCCCACGATGATTTCCTGAAACAAATGCTCTCCAACCTTCCTTCTTCATCCTGGACCCTCGACCTCAACCCTAAGCCCTTATGGGACATCAACCCTTCCTCCAATTCCGACGAAACGCCACCCTCTGACGCTGATAATGTCGCTTTCCCATACGACGAACAAGCAAACCTGGCCTCCAAATTCCAAAACCACCAGATCAGTGACAAGGCTGCGGCGGCTCTCATGCTCCAACAGCAGCTTCTCATGTCCAGAGATTCAGGGCTTCTCCAGATGCCCTTGTCGTTAGGCGGCGGAGACCTTGAGTCAAACAGAAACGGCGTCGTTGACGGGTCGTCCTTCAAATCTCACGCTCCGGCGCAGGCCGGTGAGGGTTCCGTTCAAGGACAGAATTTTGGTGCTTCAGTTGGCGCAACGAACCAGGCCTCGGCTGGTGGTACCCTGGGTCAGCCGAAGCAGAGGGTCAGGGCCAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAGAGGTTACGGAGGGAAAGAATCGCGGAGAGAATGAAGGCCTTGCAGGAACTGGTTCCCAATGCCAACAAGACTGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTCAAGTTCCTACAGCTCCAAGTCAAGGTTTTGAGCATGAGCAGATTGGGCGGTGCAGCTGGTGTCGCTCCCCTTGTTGCTGATATATCCTCTGAGGGAGGCGGTGACTGTATTCAAGCTGGGATCCATCCACGAAACTCGAACGGTAACCAAACGGCGGCGTCGTCCGCCAACGAGAGCCTCACCATGACGGAGCAGCAGGTGGCCAAGCTCATGGAGGAAGACATGGGCTCCGCCATGCAGTACCTGCAGGGCAAGGGTCTCTGCCTCATGCCCATTTCCCTCGCAAACGCCATCTCCGGCGTCACGTGTCACGCCAGGAACCCCTTGATCAACACCGCCAACAACAATCCAATCATCACATCCAACGGTGACGGACCGTCCTCTCCGGGCATGTCCGTGTTGACCGTCCAGTCAGCTACTGTGGGTAACGGCGGCGTGGACAGCGTCGTCAAAGACTCCTCCTCCGTTTCGAAGTCGTGA 1239 0.5472 MQPCSREMQGLNSLLNSSQIPLHNNNNNNNNNQQQIQMNHLNHFEPTSHDDFLKQMLSNLPSSSWTLDLNPKPLWDINPSSNSDETPPSDADNVAFPYDEQANLASKFQNHQISDKAAAALMLQQQLLMSRDSGLLQMPLSLGGGDLESNRNGVVDGSSFKSHAPAQAGEGSVQGQNFGASVGATNQASAGGTLGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAGVAPLVADISSEGGGDCIQAGIHPRNSNGNQTAASSANESLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLANAISGVTCHARNPLINTANNNPIITSNGDGPSSPGMSVLTVQSATVGNGGVDSVVKDSSSVSKS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00059 412 SMART finulus 213 262 IPR011598 GO:0046983
Gabi3558g00059 412 Coils Coil 306 326 - -
Gabi3558g00059 412 Gene3D - 202 264 IPR036638 GO:0046983
Gabi3558g00059 412 Pfam Helix-loop-helix DNA-binding domain 212 257 IPR011598 GO:0046983
Gabi3558g00059 412 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 350 - -
Gabi3558g00059 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
Gabi3558g00059 412 FunFam Transcription factor bHLH66 204 269 - -
Gabi3558g00059 412 MobiDBLite consensus disorder prediction 182 211 - -
Gabi3558g00059 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 267 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00059 Gabi-Chr3558 469246 472561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00059 184 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 61.694 1.55e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3558g00059 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00059 - - cave:132185902 477.248