Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00047 ATGTCTTTTAGAAAAACCCCATTCCCTCGTCTCCTCCTTAACGATGTCGCTTGCATGAGAAATGCCCAGCAAGTTTTGCGTCATGTGAATGTCTCTCTTCATGATGGAGCGGCGTTGATGCTAACAGGTGCAAATGGCTCAGGGAAGACAACTTTCCTGCGCATGTTAGCTGGGTTTTCTCGTCCTTCTGCTGGTGAAATCCTTTGGAATGGCCATGACATTCAAAAATCTGGAATCTTCCATCAGTATAAGCTTCAGCTTAACTGGCTCTCCTTCAATGATGCCATTACAGATAGGTTTACAGTTCTTGACAATGTTCAGTGGTTTGAAGTTCTCGAAGGAAAGCAAGGGAAGGCTATGCCTGCCCTTGAGTTAATGGGATTGGGAAGATTGGCCAAGGAAAAGCCAAGGATGCTGTCTATGGGCCAGCGGAAAAGACTGCAACTTGCCAGATTGCTGGCAATGGATCGCCCCATATGGTTGCTGGATGAGCCTTCAGTTGCATTGGACGATGAAGGTGTAAAGTTACTTGAGTATATAATCGCAGAGCATAGGAAACAGGGAGGAATTGTGATTGTGGCGACTCATTTACCCATTCAGATTGAAGATTCCATGGTCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACTTTTGTGGATATGCTTGACCGGGCAGACATTTGTTAA 690 0.4594 MSFRKTPFPRLLLNDVACMRNAQQVLRHVNVSLHDGAALMLTGANGSGKTTFLRMLAGFSRPSAGEILWNGHDIQKSGIFHQYKLQLNWLSFNDAITDRFTVLDNVQWFEVLEGKQGKAMPALELMGLGRLAKEKPRMLSMGQRKRLQLARLLAMDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIQIEDSMVLRLPPRFPRRMTFVDMLDRADIC 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00047 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Gabi3558g00047 229 SMART AAA_5 35 223 IPR003593 GO:0016887
Gabi3558g00047 229 Gene3D - 6 208 IPR027417 -
Gabi3558g00047 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 7 223 IPR005895 GO:0017004|GO:0022857
Gabi3558g00047 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 229 IPR003439 GO:0005524
Gabi3558g00047 229 NCBIfam heme ABC exporter ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Gabi3558g00047 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 197 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00047 Gabi-Chr3558 438250 442545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00047 24 178 Calmodulin-binding Proteins AT2G36910 26.316 1.12e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00047 - - jre:109012900 401.749