LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3558g00032	ATGTTTTCCAGAATTGCACTTGTCCTAACCTTTCAAGTTTTCCTTTGCACTCTGAACTTCCAACCCTCAGAAGCTCAATCATGGTTCAAAATTGGTTACTGGTACTATGGCAGAGAATCTCCCACATCAGATATAAACTCTGCCCTCTATACTCACCTGATATGCGCTTTTGCTGATGTGAACAATTCCTCCTTTGAGCTTTCTGTCCCTTCATCAAATGAGCAACAGTTTTCTACTTTCACTAGCACTCTCAAACTGAAGAACCCATCCATCACTACACTTCTCTCCATTGGTGGTGACCAAAACACTATTTCCATCCAATCCATGATTGCCAATGCTTCTTCAAGGAAACCCTTCATTCAATCTTCAATAAGAATAGCTAGGCTTTATGGATTTCAGGGGCTGGACTTGTTCTGGTATTCCTTTGAGACAGGTTCTGATGTTGACAATTTGGGACAACTTTTCCAAGAATGGAGAGCTGCTGCAAAATCTGAAGCAGAAACAAACTCTACACTTCAAGAATTGATCTTGACTGCATCTGTTCAAGCTTCACCTGATTTGGATTTTGGGTCCTTCCCAGTTGAGTCAATCAAAAGTAACTTGAATTGGATACATGTTAATGCATATAATTATCACACACCCTTGGGGCAAAACTTCACTGGTGCACCTTCAGCTTTATATGACCCTGCAAGTGATATCAACACTGACTATTATATCAAGGCATGGATTGGGAAGGGGATATCATCTAGCAAGTTGATTCTGGGTTTGCCTTTCTATGGATATGCTTGGAAACTACAAAAACCCAATAACAACTCAATAGGAGCACCAGCAACAGGTCCAGCATTTGATGATGATGGATCTAAAAGCTATGAGGACATAAAAAATGATATTCAGAAAAATGGGGCTGCAGTAATGTATAATGACACTTACGTAACAAACTACTGTTCATTTGGATCAACTTGGATTGGCTTTGACGACGTTGAGGTTGTCCGAAAGAAGGTATCATATGCCAGGGAAAAGAAGCTACTTGGTTACTATGTATGGCAAGTTTCCCATGATGACGACAAATGGACACTTACAACCGCAGCAGCTGAACAGGTTGATGAAGACAAAAAGCACGGGTGGAAATTATTAGTGATCATTTTGAGTATAACTAGTATAGTTATTCTCATGTTTGGTGTCATTATCTATTGCCAAAGGAAGAGAATATTCAAATCAACCGGGACAGTTAATGCTCGGTTTACAGTGAATAAAGAAGTTGTAGGACCTTTTAATGGGGATGCTCCTGATTTACAGGGCATCCTAACTGATGGTCAGGAAATAGCCGTAAAAAAATTATCAAAAGCTTCTACACAAGGATTCGAGGAATTCAAAAATGAGGTAACACTTACTGCAAGGTTACAACATGTGAATCTTGTACAGTTGTTGGGTTTCTGCGTTGAAAGAGAAGAGCAGATGCTGGTGTACGAGTACATGGAAAATAAAAGCCTGGACTTCTACCTCTTTGACCCTGTTAGACGACATATGTTAGATTGGAATAAGCGTGTTGGCATCATTGAAGGAGTTACGCAAGGTCTTCTTTATCTTCAAGAATATTCAAGATTCACCATAATTCATCGAGACATAAAAGCTAGCAATATTTTATTAGACTCTGAGATGAAGCCAAAGATATCAGACTTTGGAATGGCAAGAATATTCACTAAAGATGAACAAGAGGCAAACACTAGCAAAATTGTGGGAACATATGGTTATATTCCTCCTGAATACGTTAAAAAAGGTGTGTACTCCACTAAATCTGATGTCTACAGTTTTGGAGTCCTACTTTTACAAATTATAAGTGGCAAGAAGACATCTGGCTTTTATGGAGAGAACGAAGATTTAAAGTTCTTGGAATATGCTTATGAGTTATGGAAAGAAGGAAAGGGTATGGAGTTCGTGGATCTTGCACTTGATGATACATCTTCACCGTGCAAACTAATGAGATGCATGCAAATTGCTTTGCTATGCGTCCAAGAACATGCAAATGATAGACCTTCCATACTGGAAGTTTATTCAATGTTGAGAAACGATAATAACACACTAGCCATCCCCAAAAAGCCTGCATTTGCAAAAGTCAGAGGTGAGGAAGAAGTAAATGAGTGTCAACCCCTACAAATTATTTCAATCAATGATGCAACCGTCACTCAAATGGTGGGCAGATAG	2202	0.3915	MFSRIALVLTFQVFLCTLNFQPSEAQSWFKIGYWYYGRESPTSDINSALYTHLICAFADVNNSSFELSVPSSNEQQFSTFTSTLKLKNPSITTLLSIGGDQNTISIQSMIANASSRKPFIQSSIRIARLYGFQGLDLFWYSFETGSDVDNLGQLFQEWRAAAKSEAETNSTLQELILTASVQASPDLDFGSFPVESIKSNLNWIHVNAYNYHTPLGQNFTGAPSALYDPASDINTDYYIKAWIGKGISSSKLILGLPFYGYAWKLQKPNNNSIGAPATGPAFDDDGSKSYEDIKNDIQKNGAAVMYNDTYVTNYCSFGSTWIGFDDVEVVRKKVSYAREKKLLGYYVWQVSHDDDKWTLTTAAAEQVDEDKKHGWKLLVIILSITSIVILMFGVIIYCQRKRIFKSTGTVNARFTVNKEVVGPFNGDAPDLQGILTDGQEIAVKKLSKASTQGFEEFKNEVTLTARLQHVNLVQLLGFCVEREEQMLVYEYMENKSLDFYLFDPVRRHMLDWNKRVGIIEGVTQGLLYLQEYSRFTIIHRDIKASNILLDSEMKPKISDFGMARIFTKDEQEANTSKIVGTYGYIPPEYVKKGVYSTKSDVYSFGVLLLQIISGKKTSGFYGENEDLKFLEYAYELWKEGKGMEFVDLALDDTSSPCKLMRCMQIALLCVQEHANDRPSILEVYSMLRNDNNTLAIPKKPAFAKVRGEEEVNECQPLQIISINDATVTQMVGR	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3558g00032	733	CDD	GH18_plant_chitinase_class_V	26	359	-	-
	Gabi3558g00032	733	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	537	549	IPR008271	GO:0004672\|GO:0006468
	Gabi3558g00032	733	SUPERFAMILY	Protein kinase-like (PK-like)	436	707	IPR011009	-
	Gabi3558g00032	733	SMART	2g34	29	353	IPR011583	GO:0008061
	Gabi3558g00032	733	Gene3D	Phosphorylase Kinase; domain 1	405	491	-	-
	Gabi3558g00032	733	Gene3D	-	258	324	IPR029070	-
	Gabi3558g00032	733	Pfam	Protein tyrosine and serine/threonine kinase	438	686	IPR001245	GO:0004672\|GO:0006468
	Gabi3558g00032	733	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	28	370	IPR001223	GO:0005975
	Gabi3558g00032	733	SUPERFAMILY	Chitinase insertion domain	259	324	IPR029070	-
	Gabi3558g00032	733	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	93	710	-	-
	Gabi3558g00032	733	Gene3D	Glycosidases	43	354	-	-
	Gabi3558g00032	733	SMART	serkin_6	431	687	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3558g00032	733	FunFam	Chitotriosidase-1	258	324	-	-
	Gabi3558g00032	733	SUPERFAMILY	(Trans)glycosidases	31	366	IPR017853	-
	Gabi3558g00032	733	FunFam	Uncharacterized protein	492	698	-	-
	Gabi3558g00032	733	Gene3D	Transferase(Phosphotransferase) domain 1	492	701	-	-
	Gabi3558g00032	733	FunFam	Uncharacterized protein	426	491	-	-
	Gabi3558g00032	733	ProSiteProfiles	Protein kinase domain profile.	381	694	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3558g00032	733	Pfam	Glycosyl hydrolases family 18	31	353	IPR001223	GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3558g00032	Gabi-Chr3558	323677	328830	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3558g00032	432	733	Receptor kinase-like Gene Family	AT4G11530	50.968	1.21e-100	322

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi3558g00032		Glyco_hydro_18	7.7e-64	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3558g00032	-		-	vun:114175226	1036.56