Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00031 ATGTTTTCCAGAATTGCACTTGTCCTATCCTTTCAAGTTTTCCTTTGCACTCTGAAGTTCCAACCCTCAGAAGCTCAATCATGGTTCAAAATTGGTTACTGGTACTATAGCAGTGACGGAATTCCCATATCAGAGATAAACTCTGCCCTCTATACTCACCTGATATGCACTTTTGCTGAGGTGAACACTTCCACCTTTGAGCTCTCTGTCTCCTCAACAAATGAGCAACACTTTTCTACTTTCACAAGCACTCTCAAACTCAAGAACCCATCCATCACTACACTTCTCTCCATTGGGGGTTACCAAAACCGGACTTCCATCCAATCCATGATTACCAATGTTTCTTCAAGGAAACCCTTCATTCAATCTTCAATAAGAATGGCTAGGCTTTATGGATTTCAGGGCCTGGACTTGTACTGGACTTCCATTGAGACAAGTTCTGATGCTGACAATTTGGGACAACTTTTCCAAGAATGGAGAGCTGCTGCAAAATCTGAAGCAGAAACAAACTCCACACTTCAAGAATTGATCTTGACTGCAGTTGTTCGAGCTTCACCTGATTTGTACCCACTTGAGTCAATCAAAAGTAACTTGAATTGGATACATGTTAATGCATATGATTATCACACACCCTGGAAACAAAACTTCACTGGTGCACCTTCAGCTTTATATGACCCTGCAAGTGATATCAACACTGACTATTATATCACGGCATGGATTAGGAAGGGTTTATCACCTAGCAAGTTGCTTTTGGGTTTGCCTTTCTATGGATATGGTTGGGAACTTCAAAACCCCAATAACAACTCAATAGGAGCACCAGCAACAGGTCCAGCATTTGATGATCATGATGGATCTAAAAGCTATAAGGACATAAAAAATGATATTCAGAAAAATGGGGCTGCAGTAATGTATAATGACACTTACGTAACAAACTACTGTTCATTTGGATCAACTTGGATAGGCTTTGACGACGTTGAGGTTGTCCGAAAGAAGGTATCATATGCCAGGGAAAAGAAGCTACTTGGTTACCATGTATGGCAAGTTTCCCATGATGACGACAAATGGACACTTACAACCGCAGCAGCTGAAGAGGTTGGCGAAGACAAAAAGGACGGGTGGAAATTATTAGCGATCATTTTGAGTATAACTGCTATAGTTATTCTCATTTTAGGTGTCATTATCTTCTATCTAAGGAAGAGAATATTCAAACCAACCGGGACGGTTAATGCTGCTAAACAATCTCCGCTTACATTGAATAAAGAAGCTGCAGGACCTTTTCATGGGGATGCTCCTGATTTACATGTCTATAGATTTTCTGACATTGAAGCGGCTACAGATAAATTTTCATATGAAAATAAGCTCGGACATGGTGGTTATGGTCCTGTTTACAAGGGCATCCTACCTGATGGTCAAGAAATAGCCGTAAAAAAATTATCAAAAGCTTCTACACAAGGTTTTGAGGAATTCAAAAATGAGGTAACAGTTACTGCAAGGTTACAACATGTGAATCTTGTACGGTTGTTGGGTTTCTGCATTGAAAGAGAAGAGCAGATGCTGGTGTACGAATACATGGAAAATAAAAGCCTGGACTTCTACCTCTTTGACCCTATTAGACGGCATATGTTAGATTGGAATAAGCGTGTTGGCATCATTGAAGGAGTTACGCAGGGTCTTCTTTATCTTCAAGAATATTCAAGATTCACCATAATTCATCGAGACATAAAAGCTAGCAATATTCTATTAGACTCTGAGATGAAGCCAAAAATTTCAGACTTTGGGATGGCAAGAATATTCACTAAAGATGAACAAGAAGCAAACACTAGCAACATTGTGGGAACATATGGTTATGTTCCTCCTGAATACATTAAGGAAGGTGTGTATTCCACTAAATCTGATGTATACAGTTTTGGAATCCTCCTTCTACAAATTATAAGTGGCAAGAAGATAGCTGGCTTTTATGGAGAGAACGAAGATTTAAAGCTCTTGGAATATGCTTATGAGTTATGGAAAGAAGGAAAGGGTATGGAGTTCGTGGATCTTGCACTTGATGATACATCTTCACCGTGCAAACTAATGAGATGCATGCAAATTGCTTTATTATGCGTCCAAGAACATGCAAATGATAGGCCTTCCATGCTTGAAGTTTATTCAATGTTGAGAAATCATAATAACTCTCTAGCCATCTCCAAAAAGCTTGCATTTTCAAAAGTGAGAGATGAGGAAGAAGTAAATGAGTTTCAACCCCTACAAAGTATTTCAGTCAATGAAGCAACCATCACTCAAATGGTGGGCAGATAG 2298 0.3938 MFSRIALVLSFQVFLCTLKFQPSEAQSWFKIGYWYYSSDGIPISEINSALYTHLICTFAEVNTSTFELSVSSTNEQHFSTFTSTLKLKNPSITTLLSIGGYQNRTSIQSMITNVSSRKPFIQSSIRMARLYGFQGLDLYWTSIETSSDADNLGQLFQEWRAAAKSEAETNSTLQELILTAVVRASPDLYPLESIKSNLNWIHVNAYDYHTPWKQNFTGAPSALYDPASDINTDYYITAWIRKGLSPSKLLLGLPFYGYGWELQNPNNNSIGAPATGPAFDDHDGSKSYKDIKNDIQKNGAAVMYNDTYVTNYCSFGSTWIGFDDVEVVRKKVSYAREKKLLGYHVWQVSHDDDKWTLTTAAAEEVGEDKKDGWKLLAIILSITAIVILILGVIIFYLRKRIFKPTGTVNAAKQSPLTLNKEAAGPFHGDAPDLHVYRFSDIEAATDKFSYENKLGHGGYGPVYKGILPDGQEIAVKKLSKASTQGFEEFKNEVTVTARLQHVNLVRLLGFCIEREEQMLVYEYMENKSLDFYLFDPIRRHMLDWNKRVGIIEGVTQGLLYLQEYSRFTIIHRDIKASNILLDSEMKPKISDFGMARIFTKDEQEANTSNIVGTYGYVPPEYIKEGVYSTKSDVYSFGILLLQIISGKKIAGFYGENEDLKLLEYAYELWKEGKGMEFVDLALDDTSSPCKLMRCMQIALLCVQEHANDRPSMLEVYSMLRNHNNSLAISKKLAFSKVRDEEEVNEFQPLQSISVNEATITQMVGR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00031 765 SMART serkin_6 448 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00031 765 FunFam Uncharacterized protein 524 728 - -
Gabi3558g00031 765 ProSiteProfiles Protein kinase domain profile. 448 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00031 765 Pfam Glycosyl hydrolases family 18 31 351 IPR001223 GO:0005975
Gabi3558g00031 765 SUPERFAMILY Protein kinase-like (PK-like) 432 740 IPR011009 -
Gabi3558g00031 765 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 80 761 - -
Gabi3558g00031 765 SMART 2g34 29 351 IPR011583 GO:0008061
Gabi3558g00031 765 CDD STKc_IRAK 454 719 - -
Gabi3558g00031 765 Gene3D - 255 322 IPR029070 -
Gabi3558g00031 765 SUPERFAMILY (Trans)glycosidases 31 367 IPR017853 -
Gabi3558g00031 765 SUPERFAMILY Chitinase insertion domain 256 322 IPR029070 -
Gabi3558g00031 765 Gene3D Glycosidases 44 352 - -
Gabi3558g00031 765 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 368 IPR001223 GO:0005975
Gabi3558g00031 765 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 416 523 - -
Gabi3558g00031 765 Gene3D Transferase(Phosphotransferase) domain 1 524 743 - -
Gabi3558g00031 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 569 581 IPR008271 GO:0004672|GO:0006468
Gabi3558g00031 765 Gene3D Phosphorylase Kinase; domain 1 416 523 - -
Gabi3558g00031 765 Pfam Protein tyrosine and serine/threonine kinase 450 718 IPR001245 GO:0004672|GO:0006468
Gabi3558g00031 765 FunFam Chitotriosidase-1 255 322 - -
Gabi3558g00031 765 CDD GH18_plant_chitinase_class_V 26 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00031 Gabi-Chr3558 307153 313317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00031 359 734 Receptor kinase-like Gene Family AT4G05200 48.021 3.82e-115 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3558g00031 Glyco_hydro_18 8.9e-67 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00031 - - vun:114175226 1071.23