Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00029 ATGGGAGAATATGTGTTCTCTAGTAGACAGCATTTGCACTATCAGTGGCGGATCTATACTATTGCAAGGACAGTTAACGCTGCTAAACAATCTTCGCTTATATTGAATAAAGAAGCTGCAGGACCTTTTCATGGGGATGCTCCTGATTTACATGTCTATAGATTTTCTGACATTGAAGCGGCTACAGATAAATTTTCATATGAAAATAAGCTCGGACAGGGTGGTTATGGTCCTGTTTACAAGGGCATCCTACCTGATGGTCAAGAAATAGCCGTAAAAAAATTATCAAAAGCTTCTACACAAGGTTTTGAGGAATTCAAAAATGAGGTAACACTTACTGCAAGGTTGCAACATGTGAATCTTGTACGGTTGTTGGGTTTCTGCATTGAAAGAGAAGAGCATATGCTGGTGTACGAATACATGGAAAATAAAAGCCTGGACTTCTACCTCTTTGACCCTATTAGACGGCATATGTTAGATTGGAATAAGCGTGTTGGCATCATTGAAGGAGTTACGCAGGGTCTTCTTTATCTTCAAGAATATTCAAGATTCACCATTATTCATCGAGACATAAAAGCTAGCAATATTTTATTAGACTCTGAGATGAAGCCAAAAATATCAGACTTTGGGATGGCAAGAATATTCACTAAAGATGAACAAGAAGCAAACACTAGCAACATTGTGGGAACATATGGTTATGTTCCTCCTGAATACATTAAGGAGGGTGTGTATTCCACTAAATCTGATGTATACAGTTTTGGAATCCTCCTTCTACAAATTATAAGTGGCAAGAAGATAGCTGGCTTTTACGGAGAGAACGAAGATTTAAAGCTCTTGGAATATGCTTATGAGTTATGGAAAGAAGGAAAGGGTATGGAGTTCGTGGATCTTGCACTTGATGATATATCTTCACCATGCAAACTAATGAGATGCTTGCATATTGCTTTGTTATGCGTCCAAGAACATGCAAATGATAGGCCTTCCATGCTTGAAGTTTATTCAATGTTGAGAAACCATAATAACTCTCTAGCCATCTCCAAAAAGCCTGCATTTTCAAAAGTGAGAGATGAGGAAGAAGTAAACGAGTGTCATCCCCTGCAAAGTATTTCCGTCGATGATGCATCCATCACTCAAATGGTGGGCAGATAG 1149 0.3864 MGEYVFSSRQHLHYQWRIYTIARTVNAAKQSSLILNKEAAGPFHGDAPDLHVYRFSDIEAATDKFSYENKLGQGGYGPVYKGILPDGQEIAVKKLSKASTQGFEEFKNEVTLTARLQHVNLVRLLGFCIEREEHMLVYEYMENKSLDFYLFDPIRRHMLDWNKRVGIIEGVTQGLLYLQEYSRFTIIHRDIKASNILLDSEMKPKISDFGMARIFTKDEQEANTSNIVGTYGYVPPEYIKEGVYSTKSDVYSFGILLLQIISGKKIAGFYGENEDLKLLEYAYELWKEGKGMEFVDLALDDISSPCKLMRCLHIALLCVQEHANDRPSMLEVYSMLRNHNNSLAISKKPAFSKVRDEEEVNECHPLQSISVDDASITQMVGR 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00029 382 SMART serkin_6 65 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00029 382 SUPERFAMILY Protein kinase-like (PK-like) 49 361 IPR011009 -
Gabi3558g00029 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gabi3558g00029 382 FunFam Uncharacterized protein 141 345 - -
Gabi3558g00029 382 Gene3D Transferase(Phosphotransferase) domain 1 141 361 - -
Gabi3558g00029 382 ProSiteProfiles Protein kinase domain profile. 65 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00029 382 CDD STKc_IRAK 71 336 - -
Gabi3558g00029 382 Pfam Protein kinase domain 67 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00029 382 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 378 - -
Gabi3558g00029 382 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 140 - -
Gabi3558g00029 382 Gene3D Phosphorylase Kinase; domain 1 27 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00029 Gabi-Chr3558 285450 288796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00029 47 351 Receptor kinase-like Gene Family AT4G11480 53.922 1.08e-119 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3558g00029 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00029 - - vun:114175226 581.637