Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00027 ATGACTTCATATCTCTTTGCTTTCTTCCTTGTCCTCCTTGTCTTGCTCCCTCTCAAATCTCAATCTTTTGCAGACACTACATCGTGGGTGAAGGCTGGTTATTACTATTCTGGCAGTGAAATATCTGCTTCAGACATAAAAGCCACCCTTTTCACTCACCTTTTATGCGCTTTTGCTTTTATAAACACCACCAACTATAAGATCTTTATCAACTCTTCGGAGGAGCACAAGTTCTCAAGCTTTACCAACACAGTGAAGCTCCAAAACCCATCTGTTTCAACGCTTCTATCCATCTGGGGTGGCAGAGAGAATTCCTCAGTTTTTTCCTCAATGCTAAACCAATCTTCTTATAGGGAAAATTTCATTGATTCTTCGATTAGAACAGCCAGGTTATATGGGTTTCAAGGTATAGACCTTACTGGGGCATGGCCAAGTTCGGACCTTGCCAATTTTGGAACCCTTTTGAAGGAGTGGCGAGCTGCAATAACTTCTGAGGCAAGAAACTCTAGCAAGTCAGAGTTAATCTTGGTGATGGCAGGTTACTACCTTAAAGCTTCGGACCCCTTGAGTTACCCTTTTGATTCAATGCAGATGAACTTGGATTGGGTCAACTTTGTGGCATATGATTACTATCTTCCTAGAAAGGACAATGTCACGGGTTTTCATGCAGCTTTATATGGTCCCTCTGGTTGGGATAATACTGATTCTGGTATCAAAGAGTGGAGGAGGAGGGGATTTTCGTCTATGAAGCTGGTAATTGGCTTGCCTTATCATGGATATGCATGGAAACTTGTGAACCGAGGAAACAATGGCGTTGGAACACCAGCATCAGGACCTGCCATTACAATGGACGGTTCCATGGCTTATAAGTTCATAAAGAGTTACATTAGAAGCTTTGGAGATGGTGTTGTTTCACATTATAATGCTACTTTTGTGGTGAATCACTTCACAGTTGCATCCACCACTTGGGTTAATTTTGATGATGTGGAGGTAATCAGGGCCAAAGTTTCTTATGCAAAGAAAAATGGGCTACTTGGTTACAACGTGTTCCAAGTGGGCAATGATGAAAATTGGGTCCTTTCAAGGGCAGCTCAAGAAATAGGTGAAGAACATCATAAGAGGAGGTTGCTGATAATTGTTCTGCTTACAACTGTGACTGTCGCGCTTCTATTGGGAATAGTATTTTGCTACTACCACCGAGGAATAGTAGCCACTGTTACCAGAATAGTACATAAACTAAGGAGATATTTATCAGCAGCTGACGAGGATCTCGATGGAAATGCTTCTGATCTGATAGTATTTAGTTATTTCACAATTAAAGTGGCAACAAATAACTTCTCAAAAGATAATAAGCTTGGAGAGGGTGGATTTGGCACAGTTTACAAGGGAAAATTACGGAAGGGACAGGAAATAGCTGTAAAAAGACTCTCAGAAACCTCAAATCAAGGCCTTGAAGAGTTCAAAAATGAGATCACACTTACAGCAAGACTACAGCATGTGAATTTAGTTAGACTTCTGGGATACTGTAATAAAAGGGATGAGAAGATTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATCGTTTCCTTTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGTCAATATCATAGAAGGGGTTACTCAAGGCCTTCTTTATCTCCAAGAGTATTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTATTGTTAGATCATGAGATGAACCCCAAGATATCAGATTTTGGTATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAGCAGGATCGTTGGAACATATGGGTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCAACCAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGCGGAAAGAAGACTTCATGTTATTATGGCACGCATGAAAATATGAACCTTTTAGAATACGCATATGAGCTGTGGAAAACAGGAAGAGGTGTGGAGTTTTGTGACCCTTCATTGGATGATACAACATCACCTTGTAAAATCATGAGATGCATGCAGGTGGCTCTTTTGTGCGTTCAAGAGAACTCTGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTCAAGAATGAAGCTGCAGCTATTGGTACTCCTAAAATGCCTGGTTTTTCAATAAAGAAAAATGAAAAAGATGAGGAAGATACATCTCACTGCGGGAACAAATTTTCTTCAATCAATGATGTTACAATTTCCCAACTGGCACCAAGATAG 2298 0.3999 MTSYLFAFFLVLLVLLPLKSQSFADTTSWVKAGYYYSGSEISASDIKATLFTHLLCAFAFINTTNYKIFINSSEEHKFSSFTNTVKLQNPSVSTLLSIWGGRENSSVFSSMLNQSSYRENFIDSSIRTARLYGFQGIDLTGAWPSSDLANFGTLLKEWRAAITSEARNSSKSELILVMAGYYLKASDPLSYPFDSMQMNLDWVNFVAYDYYLPRKDNVTGFHAALYGPSGWDNTDSGIKEWRRRGFSSMKLVIGLPYHGYAWKLVNRGNNGVGTPASGPAITMDGSMAYKFIKSYIRSFGDGVVSHYNATFVVNHFTVASTTWVNFDDVEVIRAKVSYAKKNGLLGYNVFQVGNDENWVLSRAAQEIGEEHHKRRLLIIVLLTTVTVALLLGIVFCYYHRGIVATVTRIVHKLRRYLSAADEDLDGNASDLIVFSYFTIKVATNNFSKDNKLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCNKRDEKILIYEYLPNKSLDRFLFDPRKSILLDWSKRVNIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNPKISDFGMARIFRKYDLEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKKTSCYYGTHENMNLLEYAYELWKTGRGVEFCDPSLDDTTSPCKIMRCMQVALLCVQENSADRPSMLEVDSLLKNEAAAIGTPKMPGFSIKKNEKDEEDTSHCGNKFSSINDVTISQLAPR 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00027 765 CDD STKc_IRAK 452 719 - -
Gabi3558g00027 765 Gene3D - 257 326 IPR029070 -
Gabi3558g00027 765 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 353 762 - -
Gabi3558g00027 765 SUPERFAMILY (Trans)glycosidases 32 356 IPR017853 -
Gabi3558g00027 765 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
Gabi3558g00027 765 Gene3D Transferase(Phosphotransferase) domain 1 522 726 - -
Gabi3558g00027 765 SUPERFAMILY Protein kinase-like (PK-like) 429 719 IPR011009 -
Gabi3558g00027 765 SMART serkin_6 446 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00027 765 Pfam Protein kinase domain 447 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00027 765 Gene3D Glycosidases 44 356 - -
Gabi3558g00027 765 Pfam Glycosyl hydrolases family 18 34 355 IPR001223 GO:0005975
Gabi3558g00027 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Gabi3558g00027 765 CDD GH18_plant_chitinase_class_V 27 361 - -
Gabi3558g00027 765 ProSiteProfiles Protein kinase domain profile. 446 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3558g00027 765 SUPERFAMILY Chitinase insertion domain 259 326 IPR029070 -
Gabi3558g00027 765 SMART 2g34 29 355 IPR011583 GO:0008061
Gabi3558g00027 765 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 371 IPR001223 GO:0005975
Gabi3558g00027 765 Gene3D Phosphorylase Kinase; domain 1 409 521 - -
Gabi3558g00027 765 FunFam Uncharacterized protein 422 521 - -
Gabi3558g00027 765 FunFam Uncharacterized protein 522 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00027 Gabi-Chr3558 268638 272950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00027 434 765 Receptor kinase-like Gene Family AT4G11530 51.335 5.21e-115 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi3558g00027 Glyco_hydro_18 9.3e-56 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00027 - - aprc:113847882 1273.46