Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00019 ATGCCGGACGGAGAATCCTCCGCCTCCGGTGTCGGCCTACCACCGATGGAGCCCTCCTTAAGCATCTCCGATCATTTACAGTCCCTGAGTCTATCCCAAGTAGAAAATCATGAGGACTCCGTTAAGAAAGACCCCAGGATAAATGCTAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTGGGGACAGGATGTGGGAAGACCCGCATTGCTGTTCTGCTTATGCATGAGATGGGTCATTTGATACGGAAGCCCCAGAAGAGCGTATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTGATCAGCAAGCAAAGGTTATAGCAGAGTCGACTGATTTTAAGGTTGGGGTTTTCTACGGGAGCCACAAGCGCTTGAAATGTCATCAAGATTGGGAGCAGGAGATTGAACAATATGAGGTTCTTGTTATGACCCCACAAATATTGCTTCACCACTTATCCCATTGTTTGATAAAGATGGAGATGATTGCGCTTTTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCTGAAATCATGAAAGTATTCTACAAAAATAATTCCACAAAGTTCCCTCGTATATTTGGCATGACTGCTTCCCCAGTTGTGGGAAAAGGTGCTTCTAGTGAAGAAAATTTAACAAAAAACATCAATAGTCTTGAACATCTGCTTGATGCTAAGGTATACTCAATTGAGGACAAGGAATTGCTATCTTTTGTGACCACTCCTGTGATTAATATATGTTATTATGATTCAACGGCAACTAGCTTGTACTTGATTTACCATGCCAAACTTGATGAGATTAAACATCAGTGCATAGCAACACTGGGTAGGAGTAAAGAAGACCACCAGAGACGGATGAACACAAAGAAACTTCTGAACCGGATGCATGATAATGTGGTTTTCTGTCTGGGGAAACTCGGCATTTGGGGAGCATTGCAAGCTAGTCGTATTCTTTTGAGAGGTGATCGCTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGATTCTGTGTGTGATAAATATCTTGCTCAGGCAGCTGAGTTCTTTACTTCACAATGCATGATAGGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCCTTTTTCTCAGCAAAGCTTTTACGCCTCATTGGGATGCTTTCCGACTTTAGGTTGCAAGAAAACATGAAATGTATAATTTTTGTAAATAGAATTGTTACTGCTAGATCCCTGTCATACATACTACAGCAGCTGAAGCTTCTAAGTAAATGGAAGAGTGATTTTCTAGTAGGAGTCCATGCTGGATTAAAGAGTATGTCACGAAAGACCATGAACAACATTGTGGAGAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGAAATAAGAAGGAACTAGATATAATTGCTGGTTTTGAGAAAGATGAATGCCAAATGAATAAGGAAATCACTAAACGAACATCCAAGGAGATATACATCATCCCGGAGGAAAAAATATTCAGAGTTGATTCATCTGGTGCTTGTGTCAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGACGAGTACTTTGACCCCAAGCCAAATTTTTTTTACTTCGATGATTTAGGGGGAATTGTCTGTCACATTATTTTGCCTTCAAATGCTCCAATACACCAAATTGTCAGTACGCCACAGTTGTCTATGGAAGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAATTAGGTTCTTTAAGTGATTGTCTTTTGCCAAAGCAAGATGATGCAGAGCCTCAGGAGCAGGTTTCGGACTCTTCTGATTCAGATGAGAGTGAAGATGCCACTTCAAGAGGAGAATTATATGAGATGCCAGTTCCTTCTGCCTTTAGATTGTCATGGATAAACGAGGAGAAAATTGTCCATCTTAACTCTTACTACATAAAATTTTGTCCCTGTCCAGAGGACAGGGTCTACAAAGAGTTTGGTCTATTCATCATGACTCGTCTTCCAATGGAGGCTGAGAAACTCGAACTCGATCTTCATCTTGCTCGTGGTAGATCTGTGATGTCAAAATTTGTTCCATTTGGAGTTGTAGAATTTGACAAAAATGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAGTTATTCTTGACAGATCAGAATTTGTTTCTGAGTTTGTAGACTTGGGTAAGGGTGCTGAATCACGTACAAGCACTTCAACCTTCTACCTTTTGCTTCCAGTCATATTCCAAGAATATGAAAATAGCATGACAGTAGATTGGAAGACAGTGAGGAGATGCCTTGGTTCAGCAATTTTCAGGCATCCAGCAGATATGGTGGATAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTTGAGAATAGTTTAGTGTATGCAACTCATAAGAAGCTGTTTTATTTTGTCACTAATATCGATCAAAAGAATGGATTGAGTCCTAATAAAGATTCGGGCACTTCAAGCTATATGGACCACTTCATTGAAAAATTTTCCATTCAACTCAAATACCCTGAACAACCACTTCTGCAAGCAAAACCACTCTTTAATTTGCACAACCTGCTACACAACCGAAAGCTTGGGGATACAGAACCACATGAGCTAGAGGAATACTTAATATATTTGCCTCCCGAGCTATGTGAACTAAAAATAGTAGGCTTTTCGAAGGACATTGGTAGTTCCATATCTTTGCTACCTTCAATTATGCACCGTCTTGGAAACTTGCTGGTTGCTATTGAACTCAAGCACATGCTATCTTCTTTCTTCCCAGAGGCAGCTGAAATTAATGCCCATAGAGTTCTAGAGGCTCTCACCACTGAGAAGTGTCAAGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGTTGTTGCTCGCCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAGAAAGCGTTCCAATGTTGTAAATAATTGCAATTTGTTTAAGTTGGCTATCAAGCGCAATTTGCAGGTCTATATATGCGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGGCGTCCTTGCCCAAGAGATTGTAACAAGGAAACTGAAGAAAGCATACACTTATGTCTCAATTCTGTTAAAGAGCAAGGGGGGGCAACTGAAATCCGATGTAATAAAAATCACCACTGGTTATATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTCGGAGCATTCATAGTTGACAGTGGCTTTAAAGCTGCAATTGCTTTCCTTACATGGATTGGCATACAAATCAAATTTGAAGCCTCACAAGTGGTTAATATTTGCGCAGGAAGTGCGGGCTATCTCCCTCTTTCTGCCGATGTTGGCATTTCTTCCCTCGAAGGTAAGTTAGGATATCACTTTATTCATAAGGGCCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCATGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTATTGGATTATTTGATTACTTCATATCTGTACTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCATTTGCCTGTGTAGCGGTTGATCGCAGCTTTGATAAATTTCTTTTATGTGATTCAAGCTGCCTGTCTGAGGCAATAAAAAAGTATGTGGACTATGTTAGAAGACATGTTGTATCATATGGTGGCATCATTGAAGGGCCAAAATGTCCTAAGGCCCTTGGGGACTTGGTGGAATCTTGTGTGGGTGCCATTCTTCTTGACTCGGGATTCAATTTGAACAAAGTTTGGGAAATTATGACATCATTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAACTGAGTCCTATTAGGGATTTGCAAGAACTTTGCCAATCTCATAATTTGGATGTGGAGTTTCTGCCATCAAAACTGACTAAAAATAAAAAGTTTTCAGTTGAAGCCAAAGTGACTGGGAATGGTGTATGTGAGACAGCTTCGGCAACCAGCGAAAATAAAAAAGAGGCTTCTAGAATTGCTTCACAGCTACTATTTTCAAACTTAAAGGCTCAAGGCTGGAAACCAAAGTCAAAAACTTTGGAAGAAGTTCTGAAATCAACCTTTAAGATGGAAGCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGCGACTACTACCATCCCGCGCTTAGTGGTTAATGGAGAACTGTGCAGCAAGTCTGACCCTGAAATTCGCCCTATCCGAATGGTAGTTGATACATTGTCCCCACATGCGAAACCTGTTGTCCAACTGCCTCAATCTTCTGCTAAGGGAGAGCTTAGTGAAACCTTTACAAGTAATGATTGCAGCGTTGACTCGTTGAGGACAGCAAGATCACGATTGTATGAATTCTGTGCTGCTTATTGCTGGAAACAACCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTGAAGTTATTCACTTGCAAGGTGACCTTGGAGATAGAAGAGACTCCAGATACGATTTTCGAGTTTGTTGGGGAACCTCTACCAAAGAAGAAAGATGCAGCAGAGAGTGCAGCTGAGGGTGCATTTTGGTACCTGCAACAGCAAGGTTACCTGCCTAATGGAAATTAA 4908 0.4085 MPDGESSASGVGLPPMEPSLSISDHLQSLSLSQVENHEDSVKKDPRINARKYQLELCKKAMEENIIVYLGTGCGKTRIAVLLMHEMGHLIRKPQKSVCVFLAPTVALVDQQAKVIAESTDFKVGVFYGSHKRLKCHQDWEQEIEQYEVLVMTPQILLHHLSHCLIKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKFPRIFGMTASPVVGKGASSEENLTKNINSLEHLLDAKVYSIEDKELLSFVTTPVINICYYDSTATSLYLIYHAKLDEIKHQCIATLGRSKEDHQRRMNTKKLLNRMHDNVVFCLGKLGIWGALQASRILLRGDRSERHELVEAEGNSSDDSVCDKYLAQAAEFFTSQCMIGDSVSDPSSVEILKEPFFSAKLLRLIGMLSDFRLQENMKCIIFVNRIVTARSLSYILQQLKLLSKWKSDFLVGVHAGLKSMSRKTMNNIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIAGFEKDECQMNKEITKRTSKEIYIIPEEKIFRVDSSGACVSSGYSISLLHQYCSKLPHDEYFDPKPNFFYFDDLGGIVCHIILPSNAPIHQIVSTPQLSMEASKRDACLKAIEELYKLGSLSDCLLPKQDDAEPQEQVSDSSDSDESEDATSRGELYEMPVPSAFRLSWINEEKIVHLNSYYIKFCPCPEDRVYKEFGLFIMTRLPMEAEKLELDLHLARGRSVMSKFVPFGVVEFDKNEIKMAEKFQEMFLKVILDRSEFVSEFVDLGKGAESRTSTSTFYLLLPVIFQEYENSMTVDWKTVRRCLGSAIFRHPADMVDKKVFPLDIHLQLANGYRSVRDVENSLVYATHKKLFYFVTNIDQKNGLSPNKDSGTSSYMDHFIEKFSIQLKYPEQPLLQAKPLFNLHNLLHNRKLGDTEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSFFPEAAEINAHRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSLHEGDLTRKRSNVVNNCNLFKLAIKRNLQVYICDQAFDPFQFYALGRPCPRDCNKETEESIHLCLNSVKEQGGATEIRCNKNHHWLYRKTIADVVEALVGAFIVDSGFKAAIAFLTWIGIQIKFEASQVVNICAGSAGYLPLSADVGISSLEGKLGYHFIHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSCLSEAIKKYVDYVRRHVVSYGGIIEGPKCPKALGDLVESCVGAILLDSGFNLNKVWEIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLDVEFLPSKLTKNKKFSVEAKVTGNGVCETASATSENKKEASRIASQLLFSNLKAQGWKPKSKTLEEVLKSTFKMEAKLIGYDETPIDVTATTTIPRLVVNGELCSKSDPEIRPIRMVVDTLSPHAKPVVQLPQSSAKGELSETFTSNDCSVDSLRTARSRLYEFCAAYCWKQPSFECCKEEGPDHLKLFTCKVTLEIEETPDTIFEFVGEPLPKKKDAAESAAEGAFWYLQQQGYLPNGN 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00019 1635 Gene3D Dicer dimerisation domain 574 670 IPR038248 -
Gabi3558g00019 1635 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Gabi3558g00019 1635 SMART DRBM_3 1552 1626 IPR014720 -
Gabi3558g00019 1635 SMART DRBM_3 1382 1448 IPR014720 -
Gabi3558g00019 1635 MobiDBLite consensus disorder prediction 665 686 - -
Gabi3558g00019 1635 Gene3D Ribonuclease III domain 1015 1179 IPR036389 GO:0004525|GO:0006396
Gabi3558g00019 1635 Gene3D - 1380 1476 - -
Gabi3558g00019 1635 SMART ultradead3 45 247 IPR014001 -
Gabi3558g00019 1635 Gene3D - 1558 1627 - -
Gabi3558g00019 1635 Gene3D - 387 551 IPR027417 -
Gabi3558g00019 1635 Pfam Dicer dimerisation domain 578 663 - -
Gabi3558g00019 1635 FunFam Endoribonuclease dicer-like 1 1204 1375 - -
Gabi3558g00019 1635 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Gabi3558g00019 1635 SUPERFAMILY dsRNA-binding domain-like 1550 1631 - -
Gabi3558g00019 1635 ProSiteProfiles PAZ domain profile. 902 972 IPR003100 GO:0005515
Gabi3558g00019 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Gabi3558g00019 1635 SUPERFAMILY RNase III domain-like 1209 1373 IPR036389 GO:0004525|GO:0006396
Gabi3558g00019 1635 CDD RIBOc 1225 1376 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 SMART riboneu5 1224 1377 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 SMART riboneu5 1019 1188 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 SMART PAZ_2_a_3 851 998 IPR003100 GO:0005515
Gabi3558g00019 1635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Gabi3558g00019 1635 FunFam Endoribonuclease dicer-like 1 385 548 - -
Gabi3558g00019 1635 ProSiteProfiles Ribonuclease III family domain profile. 986 1168 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 555 IPR001650 -
Gabi3558g00019 1635 SUPERFAMILY PAZ domain 870 970 IPR036085 GO:0005515
Gabi3558g00019 1635 Gene3D - 46 281 IPR027417 -
Gabi3558g00019 1635 SUPERFAMILY RNase III domain-like 1017 1183 IPR036389 GO:0004525|GO:0006396
Gabi3558g00019 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 529 IPR027417 -
Gabi3558g00019 1635 SUPERFAMILY dsRNA-binding domain-like 1336 1448 - -
Gabi3558g00019 1635 ProSiteProfiles Ribonuclease III family domain profile. 1209 1354 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 PANTHER DICER-RELATED 62 1454 - -
Gabi3558g00019 1635 FunFam Endoribonuclease dicer-like 1 573 669 - -
Gabi3558g00019 1635 Gene3D Ribonuclease III domain 1207 1379 IPR036389 GO:0004525|GO:0006396
Gabi3558g00019 1635 FunFam Endoribonuclease dicer-like protein 44 284 - -
Gabi3558g00019 1635 SMART helicmild6 424 514 IPR001650 -
Gabi3558g00019 1635 Pfam PAZ domain 873 993 IPR003100 GO:0005515
Gabi3558g00019 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1381 1449 IPR014720 -
Gabi3558g00019 1635 Gene3D paz domain 867 970 - -
Gabi3558g00019 1635 Pfam Helicase conserved C-terminal domain 406 512 IPR001650 -
Gabi3558g00019 1635 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3558g00019 1635 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1551 1626 - -
Gabi3558g00019 1635 CDD DSRM_DCL_plant 1558 1627 - -
Gabi3558g00019 1635 Pfam Ribonuclease III domain 1037 1168 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 Pfam Ribonuclease III domain 1244 1354 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 CDD RIBOc 1022 1186 IPR000999 GO:0004525|GO:0006396
Gabi3558g00019 1635 CDD DEXHc_dicer 47 246 - -
Gabi3558g00019 1635 ProSitePatterns Ribonuclease III family signature. 1244 1252 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00019 Gabi-Chr3558 191930 221149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00019 412 511 Eukaryotic Initiation Factors Gene Family AT3G19760 31.000 7.60e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00019 K11592 - gmx:100818702 2637.83