Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3558g00018 ATGCCGGACGGAGAATCCTCCGCCTCCGGTGTCGGCCTACCACCGATGGAGCCCTCCTTAAGCATCTCCGATCATTTACAGTCCCTGAGTCTATCCCAAGTAGAAAATCATGAGGACTCCGTTAAGAAAGACCCCAGGATAAATGCTAGAAAGTATCAGTTGGAGTTGTGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTGGGGACAGGATGTGGGAAGACCCGCATTGCTGTTCTGCTTATGCATGAGATGGGTCATTTGATACGGAAGCCCCAGAAGAGCGTATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTGATCAGCAAGCAAAGGTTATAGCAGAGTCGACTGATTTTAAGGTTGGGGTTTTCTACGGGAGCCACAAGCGCTTGAAATGTCATCAAGATTGGGAGCAGGAGATTGAACAATATGAGGTTCTTGTTATGACCCCACAAATATTGCTTCACCACTTATCCCATTGTTTGATAAAGATGGAGATGATTGCGCTTTTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAGCCATCCTTATGCTGAAATCATGAAAGTATTCTACAAAAATAATTCCACAAAGTTCCCTCGTATATTTGGCATGACTGCTTCCCCAGTTGTGGGAAAAGGTGCTTCTAGTGAAGAAAATTTAACAAAAAACATCAATAGTCTTGAACATCTGCTTGATGCTAAGGTATACTCAATTGAGGACAAGGAATTGCTATCTTTTGTGACCACTCCTGTGATTAATATATGTTATTATGATTCAACGGCAACTAGCTTGTACTTGATTTACCATGCCAAACTTGATGAGATTAAACATCAGTGCATAGCAACACTGGGTAGGAGTAAAGAAGACCACCAGAGACGGATGAACACAAAGAAACTTCTGAACCGGATGCATGATAATGTGGTTTTCTGTCTGGGGAAACTCGGCATTTGGGGAGCATTGCAAGCTAGTCGTATTCTTTTGAGAGGTGATCGCTCTGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGATTCTGTGTGTGATAAATATCTTGCTCAGGCAGCTGAGTTCTTTACTTCACAATGCATGATAGGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCCTTTTTCTCAGCAAAGCTTTTACGCCTCATTGGGATGCTTTCCGACTTTAGGTTGCAAGAAAACATGAAATGTATAATTTTTGTAAATAGAATTGTTACTGCTAGATCCCTGTCATACATACTACAGCAGCTGAAGCTTCTAAGTAAATGGAAGAGTGATTTTCTAGTAGGAGTCCATGCTGGATTAAAGAGTATGTCACGAAAGACCATGAACAACATTGTGGAGAAGTTTCGCTCTGGAGAGTTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGCATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGAAATAAGAAGGAACTAGATATAATTGCTGGTTTTGAGAAAGATGAATGCCAAATGAATAAGGAAATCACTAAACGAACATCCAAGGAGATATACATCATCCCGGAGGAAAAAATATTCAGAGTTGATTCATCTGGTGCTTGTGTCAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGACGAGTACTTTGACCCCAAGCCAAATTTTTTTTACTTCGATGATTTAGGGGGAATTGTCTGTCACATTATTTTGCCTTCAAATGCTCCAATACACCAAATTGTCAGTACGCCACAGTTGTCTATGGAAGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATTGAAGAACTGTATAAATTAGGTTCTTTAAGTGATTGTCTTTTGCCAAAGCAAGATGATGCAGAGCCTCAGGAGCAGGTTTCGGACTCTTCTGATTCAGATGAGAGTGAAGGGGATGCCACTTCAAGAGGAGAATTATATGAGATGCCAGTTCCTTCTGCCTTTAGATTGTCATGGATAAACGAGGAGAAAATTGTCCATCTTAACTCTTACTACATAAAATTTTGTCCCTGTCCAGAGGACAGGGTCTACAAAGAGTTTGGTCTATTCATCATGACTCGTCTTCCAATGGAGGCTGAGAAACTCGAACTCGATCTTCATCTTGCTCGTGGTAGATCTGTGATGTCAAAATTTGTTCCATTTGGAGTTGTAGAATTTGACAAAAATGAGATTAAGATGGCAGAGAAATTTCAAGAAATGTTCCTCAAAGTTATTCTTGACAGATCAGAATTTGTTTCTGAGTTTGTAGACTTGGGTAAGGGTGCTGAATCACGTACAAGCACTTCAACCTTCTACCTTTTGCTTCCAGTCATATTCCAAGAATATGAAAATAGCATGACAGTAGATTGGAAGACAGTGAGGAGATGCCTTGGTTCAGCAATTTTCAGGCATCCAGCAGATATGGTGGATAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTTGAGAATAGTTTAGTGTATGCAACTCATAAGAAGCTGTTTTATTTTGTCACTAATATCGATCAAAAGAATGGATTGAGTCCTAATAAAGATTCGGGCACTTCAAGCTATATGGACCACTTCATTGAAAAATTTTCCATTCAACTCAAATACCCTGAACAACCACTTCTGCAAGCAAAACCACTCTTTAATTTGCACAACCTGCTACACAACCGAAAGCTTGGGGATACAGAACCACATGAGCTAGAGGAATACTTAATATATTTGCCTCCCGAGCTATGTGAACTAAAAATAGTAGGCTTTTCGAAGGACATTGGTAGTTCCATATCTTTGCTACCTTCAATTATGCACCGTCTTGGAAACTTGCTGGTTGCTATTGAACTCAAGCACATGCTATCTTCTTTCTTCCCAGAGGCAGCTGAAATTAATGCCCATAGAGTTCTAGAGGCTCTCACCACTGAGAAGTGTCAAGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGTTGTTGCTCGCCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAGAAAGCGTTCCAATGTTGTAAATAATTGCAATTTGTTTAAGTTGGCTATCAAGCGCAATTTGCAGGTCTATATATGCGATCAGGCATTTGATCCCTTCCAGTTCTATGCATTAGGGCGTCCTTGCCCAAGAGATTGTAACAAGGAAACTGAAGAAAGCATACACTTATGTCTCAATTCTGTTAAAGAGCAAGGGGGGGCAACTGAAATCCGATGTAATAAAAATCACCACTGGTTATATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTCGGAGCATTCATAGTTGACAGTGGCTTTAAAGCTGCAATTGCTTTCCTTACATGGATTGGCATACAAATCAAATTTGAAGCCTCACAAGTGGTTAATATTTGCGCAGGAAGTGCGGGCTATCTCCCTCTTTCTGCCGATGTTGGCATTTCTTCCCTCGAAGGTAAGTTAGGATATCACTTTATTCATAAGGGCCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCATGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTATTGGATTATTTGATTACTTCATATCTGTACTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCATTTGCCTGTGTAGCGGTTGATCGCAGCTTTGATAAATTTCTTTTATGTGATTCAAGCTGCCTGTCTGAGGCAATAAAAAAGTATGTGGACTATGTTAGAAGACATGTTGTATCATATGGTGGCATCATTGAAGGGCCAAAATGTCCTAAGGCCCTTGGGGACTTGGTGGAATCTTGTGTGGGTGCCATTCTTCTTGACTCGGGATTCAATTTGAACAAAGTTTGGGAAATTATGACATCATTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAACTGAGTCCTATTAGGGATTTGCAAGAACTTTGCCAATCTCATAATTTGGATGTGGAGTTTCTGCCATCAAAACTGACTAAAAATAAAAAGTTTTCAGTTGAAGCCAAAGTGACTGGGAATGGTGTATGTGAGACAGCTTCGGCAACCAGCGAAAATAAAAAAGAGGCTTCTAGAATTGCTTCACAGCTACTATTTTCAAACTTAAAGGCTCAAGGCTGGAAACCAAAGTCAAAAACTTTGGAAGAAGTTCTGAAATCAACCTTTAAGATGGAAGCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGCGACTACTACCATCCCGCGCTTAGTGGTTAATGGAGAACTGTGCAGCAAGTCTGACCCTGAAATTCGCCCTATCCGAATGGTAGTTGATACATTGTCCCCACATGCGAAACCTGTTGTCCAACTGCCTCAATCTTCTGCTAAGGGAGAGCTTAGTGAAACCTTTACAAGTAATGATTGCAGCGTTGACTCGTTGAGGACAGCAAGATCACGATTGTATGAATTCTGTGCTGCTTATTGCTGGAAACAACCTTCATTTGAATGCTGCAAGGAAGAGGGACCAGACCACCTGAAGTTATTCACTTGCAAGGTGACCTTGGAGATAGAAGAGACTCCAGATACGATTTTCGAGTTTGTTGGGGAACCTCTACCAAAGAAGAAAGATGCAGCAGAGAGTGCAGCTGAGGGTGCATTTTGGTACCTGCAACAGCAAGGTTACCTGCCTAATGGAAATTAA 4911 0.4089 MPDGESSASGVGLPPMEPSLSISDHLQSLSLSQVENHEDSVKKDPRINARKYQLELCKKAMEENIIVYLGTGCGKTRIAVLLMHEMGHLIRKPQKSVCVFLAPTVALVDQQAKVIAESTDFKVGVFYGSHKRLKCHQDWEQEIEQYEVLVMTPQILLHHLSHCLIKMEMIALLIFDECHHAQVKSSHPYAEIMKVFYKNNSTKFPRIFGMTASPVVGKGASSEENLTKNINSLEHLLDAKVYSIEDKELLSFVTTPVINICYYDSTATSLYLIYHAKLDEIKHQCIATLGRSKEDHQRRMNTKKLLNRMHDNVVFCLGKLGIWGALQASRILLRGDRSERHELVEAEGNSSDDSVCDKYLAQAAEFFTSQCMIGDSVSDPSSVEILKEPFFSAKLLRLIGMLSDFRLQENMKCIIFVNRIVTARSLSYILQQLKLLSKWKSDFLVGVHAGLKSMSRKTMNNIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIAGFEKDECQMNKEITKRTSKEIYIIPEEKIFRVDSSGACVSSGYSISLLHQYCSKLPHDEYFDPKPNFFYFDDLGGIVCHIILPSNAPIHQIVSTPQLSMEASKRDACLKAIEELYKLGSLSDCLLPKQDDAEPQEQVSDSSDSDESEGDATSRGELYEMPVPSAFRLSWINEEKIVHLNSYYIKFCPCPEDRVYKEFGLFIMTRLPMEAEKLELDLHLARGRSVMSKFVPFGVVEFDKNEIKMAEKFQEMFLKVILDRSEFVSEFVDLGKGAESRTSTSTFYLLLPVIFQEYENSMTVDWKTVRRCLGSAIFRHPADMVDKKVFPLDIHLQLANGYRSVRDVENSLVYATHKKLFYFVTNIDQKNGLSPNKDSGTSSYMDHFIEKFSIQLKYPEQPLLQAKPLFNLHNLLHNRKLGDTEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKHMLSSFFPEAAEINAHRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSLHEGDLTRKRSNVVNNCNLFKLAIKRNLQVYICDQAFDPFQFYALGRPCPRDCNKETEESIHLCLNSVKEQGGATEIRCNKNHHWLYRKTIADVVEALVGAFIVDSGFKAAIAFLTWIGIQIKFEASQVVNICAGSAGYLPLSADVGISSLEGKLGYHFIHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSCLSEAIKKYVDYVRRHVVSYGGIIEGPKCPKALGDLVESCVGAILLDSGFNLNKVWEIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLDVEFLPSKLTKNKKFSVEAKVTGNGVCETASATSENKKEASRIASQLLFSNLKAQGWKPKSKTLEEVLKSTFKMEAKLIGYDETPIDVTATTTIPRLVVNGELCSKSDPEIRPIRMVVDTLSPHAKPVVQLPQSSAKGELSETFTSNDCSVDSLRTARSRLYEFCAAYCWKQPSFECCKEEGPDHLKLFTCKVTLEIEETPDTIFEFVGEPLPKKKDAAESAAEGAFWYLQQQGYLPNGN 1636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3558g00018 1636 Pfam DEAD/DEAH box helicase 51 212 IPR011545 GO:0003676|GO:0005524
Gabi3558g00018 1636 CDD RIBOc 1023 1187 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 Gene3D Ribonuclease III domain 1208 1380 IPR036389 GO:0004525|GO:0006396
Gabi3558g00018 1636 SMART ultradead3 45 247 IPR014001 -
Gabi3558g00018 1636 SMART DRBM_3 1553 1627 IPR014720 -
Gabi3558g00018 1636 SMART DRBM_3 1383 1449 IPR014720 -
Gabi3558g00018 1636 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1627 - -
Gabi3558g00018 1636 Gene3D - 387 551 IPR027417 -
Gabi3558g00018 1636 Gene3D paz domain 868 971 - -
Gabi3558g00018 1636 Pfam Dicer dimerisation domain 578 663 - -
Gabi3558g00018 1636 SUPERFAMILY dsRNA-binding domain-like 1551 1632 - -
Gabi3558g00018 1636 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Gabi3558g00018 1636 CDD DSRM_DCL_plant 1559 1628 - -
Gabi3558g00018 1636 PANTHER DICER-RELATED 62 1455 - -
Gabi3558g00018 1636 SUPERFAMILY dsRNA-binding domain-like 1337 1449 - -
Gabi3558g00018 1636 SMART PAZ_2_a_3 852 999 IPR003100 GO:0005515
Gabi3558g00018 1636 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Gabi3558g00018 1636 FunFam Endoribonuclease dicer-like 1 1205 1376 - -
Gabi3558g00018 1636 FunFam Endoribonuclease dicer-like 1 385 548 - -
Gabi3558g00018 1636 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 555 IPR001650 -
Gabi3558g00018 1636 SUPERFAMILY RNase III domain-like 1018 1184 IPR036389 GO:0004525|GO:0006396
Gabi3558g00018 1636 SUPERFAMILY PAZ domain 871 971 IPR036085 GO:0005515
Gabi3558g00018 1636 Gene3D - 46 281 IPR027417 -
Gabi3558g00018 1636 ProSiteProfiles Ribonuclease III family domain profile. 987 1169 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 SUPERFAMILY RNase III domain-like 1210 1374 IPR036389 GO:0004525|GO:0006396
Gabi3558g00018 1636 ProSitePatterns Ribonuclease III family signature. 1245 1253 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 Gene3D - 1381 1477 - -
Gabi3558g00018 1636 FunFam Endoribonuclease dicer-like 1 573 669 - -
Gabi3558g00018 1636 FunFam Endoribonuclease dicer-like protein 44 284 - -
Gabi3558g00018 1636 ProSiteProfiles Ribonuclease III family domain profile. 1210 1355 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 SMART helicmild6 424 514 IPR001650 -
Gabi3558g00018 1636 Pfam Ribonuclease III domain 1245 1355 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 Pfam Ribonuclease III domain 1038 1169 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 CDD RIBOc 1226 1377 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 Gene3D Dicer dimerisation domain 574 670 IPR038248 -
Gabi3558g00018 1636 ProSiteProfiles PAZ domain profile. 903 973 IPR003100 GO:0005515
Gabi3558g00018 1636 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1552 1628 IPR014720 -
Gabi3558g00018 1636 SMART riboneu5 1225 1378 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 SMART riboneu5 1020 1189 IPR000999 GO:0004525|GO:0006396
Gabi3558g00018 1636 Pfam Helicase conserved C-terminal domain 406 512 IPR001650 -
Gabi3558g00018 1636 Gene3D Ribonuclease III domain 1016 1180 IPR036389 GO:0004525|GO:0006396
Gabi3558g00018 1636 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1382 1450 IPR014720 -
Gabi3558g00018 1636 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3558g00018 1636 Gene3D - 1559 1628 - -
Gabi3558g00018 1636 MobiDBLite consensus disorder prediction 665 687 - -
Gabi3558g00018 1636 Pfam PAZ domain 874 994 IPR003100 GO:0005515
Gabi3558g00018 1636 CDD DEXHc_dicer 47 246 - -
Gabi3558g00018 1636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 529 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3558g00018 Gabi-Chr3558 191930 221149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3558g00018 412 511 Eukaryotic Initiation Factors Gene Family AT3G19760 31.000 7.67e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3558g00018 K11592 - gmx:100818702 2633.21