Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00065 ATGGAGGGTACAGACCAAAAGATATGCAGCTTCATCAATGATACAAATGATCAGCTGCAAAATCCAAGAACCCATAAGCAATCCCATTGTCTTTCTTTTGCAAAACTTGCACAGAATTACCCTCCTGGTTTTCCAAGAATGGTATTTGCAGAGATAATAGGCACCTATCTGTTGGTTTTTTTGGGAAGTGGTGCTTCTGCTCTTAATGCTATTGATGAAAACAAAGTCTCAAAACTGGCAGGTTCACTTGCAGGAGGATTCACTGTAACGGTGATGATTTATGCAATTGGACACATCTCTGGGGCACACATGAATCCTGCAGTCTCCTTAGCTTTTGCCGCCGTGAGGCGTTTTCCTTGGAAACAGGTCCCATTTTACATTGCAGCTCAACTCACAGGAGCTATTTCTGCTTCATATACGGTGAGAGCGCTGTTAGATCCAGCAAAGCAGCTTGGGGAAACGACACCTTCAGGATCAGACATTCAAGCACTAATCATGGAAATGGTTTCCACCTTCACCTTGATGTTCATAGCCACTGCCGTGTCCACCGACAAAAATGCTATAGGAGAGCTGGGAGGACTAGCCGTTGGTTTTTCTGTTAGCATAGCAGGCATTGTCGCCGGGCCAATATCAGGGGGATCAATGAACCCAGTAAGGACATTAGGTCCTGCAATTGCTAGTGCATCCTACAAGGGACTTTGGGTGTATATGGTTGGACCAGTTACTGGGGCAATTTTAGGTGCATGGTCTTACACTGTGATTCAGGGCACTGATAAGCCAGCTTCTGTAATTTCACTATCTTCCTTTCCGTTCAAGCTGCGCCAGAGGATGAATGAAACTGAGCTAGTTCGTAACAACGACCACCTCACCTCGGTTTGA 879 0.4551 MEGTDQKICSFINDTNDQLQNPRTHKQSHCLSFAKLAQNYPPGFPRMVFAEIIGTYLLVFLGSGASALNAIDENKVSKLAGSLAGGFTVTVMIYAIGHISGAHMNPAVSLAFAAVRRFPWKQVPFYIAAQLTGAISASYTVRALLDPAKQLGETTPSGSDIQALIMEMVSTFTLMFIATAVSTDKNAIGELGGLAVGFSVSIAGIVAGPISGGSMNPVRTLGPAIASASYKGLWVYMVGPVTGAILGAWSYTVIQGTDKPASVISLSSFPFKLRQRMNETELVRNNDHLTSV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00065 292 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Gabi3551g00065 292 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 PRINTS Major intrinsic protein family signature 234 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 PRINTS Major intrinsic protein family signature 46 65 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 PRINTS Major intrinsic protein family signature 197 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 PANTHER AQUAPORIN NIP2-1 25 265 IPR034294 -
Gabi3551g00065 292 NCBIfam MIP family channel protein 50 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 CDD MIP 46 254 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 Pfam Major intrinsic protein 45 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi3551g00065 292 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
Gabi3551g00065 292 SUPERFAMILY Aquaporin-like 41 261 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00065 Gabi-Chr3551 539789 543019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00065 50 281 Major Intrinsic Protein MIP AT5G37820 47.009 4.49e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00065 K09874 - gmx:100788071 354.755