Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00050 ATGGCCTTGTCAAGTCCACAAATACAAAGGTTCCTCTTAAGCAAGCTCCATAGCCGCTCCACCTTCAAGAACACTCAGAGAAACATCTTTACCATCACGAGCAGAAGCCAGTGCTGCTCTGCCATAACCATTGATGCCCCATCATCTTTGGCTGAGGTGCCTTGTATAAGATGGGGATCCATAGCTTTGCAGGGTCTCCGCGAAGAGATGGAAGATGATATTATTGTTCGACCTGATGGACTTGAAGGCTTCTCTTTTGCAGCTGTTTTTGATGGGCATGGAGGGTTTTCTTCTGTTCAGTTCCTCAGGGATGAGTTATACAAGGAGTGTCTTGAAACTTTACAAGGTGGGCTACTATTAGTTGAGAAAGATTTCAAAGCCATTCAAGAAGCATTACAGGAAGCATTTGTCAAAGCTGACACGAGGTTGTTAAAATGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACAGCTACTACGGTGTTCATAGGAGATGATAAACTACTCATTTCACATATTGGTGACTCATCTGTGGTTCTATGCAGATCTGGAAAAGCAGAAGTGCTGACAAGTCCACACCGACCATATGGGAGCAACAAGGCTTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACATTCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAGATGGACAGAAAAGTTTATTTCTCGTGTACAGCTCAACAATGACTTGGTTGTTGCATGCCCTGATATTTATCAAGTTGCTCTTGGCTCAGACACAGAATTTATAGTATTAGCATCTGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTTGTGAGGGATCAACTACGACAACATGGAAACATTCAGCTAGCTTGTGAAGCTCTTGCACAAGCCGCATTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCCGATTTAGGGCGGACAGATTGGAAGAATGTGCCACTGCAGCAACAAAATATTATATTTGAGCTGGTCCAAGCCGTTGCCACTATGGGAATTGTGTCTATTGGAATCTTTTTCATCACAGCTTTCTTTATAGATTAA 1164 0.427 MALSSPQIQRFLLSKLHSRSTFKNTQRNIFTITSRSQCCSAITIDAPSSLAEVPCIRWGSIALQGLREEMEDDIIVRPDGLEGFSFAAVFDGHGGFSSVQFLRDELYKECLETLQGGLLLVEKDFKAIQEALQEAFVKADTRLLKWLEMNGEEDESGATATTVFIGDDKLLISHIGDSSVVLCRSGKAEVLTSPHRPYGSNKASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDIRFKTKKNEMLQKGVQEGRWTEKFISRVQLNNDLVVACPDIYQVALGSDTEFIVLASDGLWDYMSSSEAVSFVRDQLRQHGNIQLACEALAQAALDRRTQDNVSIIIADLGRTDWKNVPLQQQNIIFELVQAVATMGIVSIGIWXFITAFFID 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00050 388 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Gabi3551g00050 388 FunFam Protein phosphatase 2C 57 56 352 - -
Gabi3551g00050 388 ProSiteProfiles PPM-type phosphatase domain profile. 57 345 IPR001932 -
Gabi3551g00050 388 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Gabi3551g00050 388 CDD PP2Cc 56 345 IPR001932 -
Gabi3551g00050 388 PANTHER PROTEIN PHOSPHATASE 2C 43 343 IPR015655 GO:0004722|GO:0006470
Gabi3551g00050 388 SMART PP2C_4 47 343 IPR001932 -
Gabi3551g00050 388 Gene3D - 56 352 IPR036457 -
Gabi3551g00050 388 Pfam Protein phosphatase 2C 59 338 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00050 Gabi-Chr3551 406725 411562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00050 1 322 PP2C-type Phosphatase Gene Family AT4G27800 61.774 1.00e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00050 K04457 - vra:106776113 643.654