Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00039 ATGCCAGACCAAGAGATTTGCAGTTACCTTAATGAACCTCGTCTTGTAGCAAGGAAGTTCCTGGCCAAACCTCAACGTGAAGGTGTTGGGGCTGTTGTTAGAAGAAGCATAGGACGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTATTGGATGAATTCTCAGTCACTGCTCCTGCTGGATTTCCTGATCATCCACATAGAGGCTTTGAGACAGTCACATACATGTTGCAGGGAGCTCTCACTCATGAAGATTTTGAAGGACATAAGGGAACAATAGAAGCAGGTGATTTGCAGTGGATGACTGCAGGGAGAGGAATAGTTCACTCCGAAATGCCTGCTTCTCAAGGGACACAAAAGGGTCTGCAGCTATGGATCAACCTCTCTTCCGAACATAAAATGATTGAACCGAAGTATCAAGAAATGTTGAGCAAGGACATAGCAGAAGCTACGAAAGATGGCATCAAAGTAAGAGTTATAGCAGGGGAAGCACTTGGGATAAAGTCTCCAATCTACACAAGGACCCCAACCATGTATTTGGACTTTTCTCTTAAACCTGGGGCTCACTTACAACAACCTATACCAAAATCTTGGAATGCTTTTGTGTATATTTTGGAAGGAGAGGGTGTCTTTGGAAATCAAAGATCTCAGCCTGCAACCTCTCACCATATTCTTCTTCTTGGTTCTGGGGATGGCCTAGAAGCATGGAATAAATCTTCTAAGCTCCTTAGGTTCATTTTGGTTGGAGGTGAACCATTGGGTGAACCTGTGGTGCAATTTGGACCCTTTGTTATGAATACTCAAGAAGAGATTGACCAAACCATTGATGATTTTGAGAACAATGCCAATGGATTTGAAAAAGCAAGACAATGGAAGTCTGAAAGTGCAGTTAGTCTTGATTTTTAA 906 0.4249 MPDQEICSYLNEPRLVARKFLAKPQREGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGALTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPASQGTQKGLQLWINLSSEHKMIEPKYQEMLSKDIAEATKDGIKVRVIAGEALGIKSPIYTRTPTMYLDFSLKPGAHLQQPIPKSWNAFVYILEGEGVFGNQRSQPATSHHILLLGSGDGLEAWNKSSKLLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENNANGFEKARQWKSESAVSLDF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00039 301 CDD cupin_pirin_C 176 252 - -
Gabi3551g00039 301 FunFam pirin 27 164 - -
Gabi3551g00039 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Gabi3551g00039 301 CDD cupin_pirin_N 31 128 - -
Gabi3551g00039 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Gabi3551g00039 301 PIRSF Pirin 12 292 IPR012093 -
Gabi3551g00039 301 PANTHER PIRIN-RELATED 10 295 IPR012093 -
Gabi3551g00039 301 Gene3D Jelly Rolls 27 279 IPR014710 -
Gabi3551g00039 301 Pfam Pirin 33 126 IPR003829 -
Gabi3551g00039 301 Gene3D Jelly Rolls 148 253 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00039 Gabi-Chr3551 269931 272999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00039 13 289 Calmodulin-binding Proteins AT3G59220 60.215 4.06e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00039 K06911 - gmx:100811930 575.089