Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00029 ATGGCCGTTGAAGCTAAGAAGGCTGTTCCTAGGGATGATCAGAACACTATAAATAGACAGTCGGGTGGTGTCCAAGGATCTCCTGGTCCTGGACGCACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACGGAAAGTGATTTTAAGATGTATTTTGACCAGTTTGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTCATAGAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTATCCCCTGGACCTAGCCGGAGCCCGTTGATAGGATATAACTATGGTTTGAATAGAGCCAGTACCTACCTAAACAGTTATGCTCAGGGTTTTAATATGAATCCAATTGGAGGATATGGAGTTAGGATGGATGGTAGATTTAGTCCACTTACTAGTGGTAGAAGTGGGTTTACCCCATTTGGCTCCAGTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCCAATTATGGGAGCAGTCTAGGATATGGTCGGATTAGTCCTTTCTACAGTGGCAACTCTAGCAGATATACTACTCCTATTGGCTATAGTGGGGGCAACGGGAGAAGTGATTCTCTTATGAACTCAACTTCTCGGAATGTCTGGGGAAATGGAGGCCTGAATAATGCTGCCAATAACCCCCTCAGTTCTGGTGCTTACTTGGGATCTGGAAGTGGAGCTTTCGGTGTTTCAATCGGAAATAGTGGGACAAATTGGGGTCCATCTGTTCCAACCCAGGGTGGAGGAGCTGCTTCTGGCTATAGTAATTGGAGTAATGTTTATGAAGGTGGAGATAGCAGCATCGGATTAGGAGGGGGAGGATATGAAAGGAACAGCAGCGCAAGTGTGACTCAGTCCTCAGCTTTTACTGCGCCAACTGGTGGTTATGAAGGATCCTACGGGAACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCCGTCTGCTGCTTCTGAGATGGATGGTTCTGGTTCATTTGGTTATGGACTTGGTGGTATAACTTCAGATGATCCAGTAAAGAGTTCTGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGACAATCTAATAGAGGAATTGCTGCCTAG 1218 0.445 MAVEAKKAVPRDDQNTINRQSGGVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHRTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASTYLNSYAQGFNMNPIGGYGVRMDGRFSPLTSGRSGFTPFGSSGYGMGVNLDSGLNPSYGGTSNYGSSLGYGRISPFYSGNSSRYTTPIGYSGGNGRSDSLMNSTSRNVWGNGGLNNAANNPLSSGAYLGSGSGAFGVSIGNSGTNWGPSVPTQGGGAASGYSNWSNVYEGGDSSIGLGGGGYERNSSASVTQSSAFTAPTGGYEGSYGNLYRSGSVYSDSTWPSAASEMDGSGSFGYGLGGITSDDPVKSSEGFIGNYNVTSRQSNRGIAA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00029 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Gabi3551g00029 405 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 401 - -
Gabi3551g00029 405 CDD RRM2_Hrp1p 35 112 - -
Gabi3551g00029 405 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3551g00029 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 93 IPR000504 GO:0003723
Gabi3551g00029 405 SUPERFAMILY RNA-binding domain, RBD 33 121 IPR035979 GO:0003676
Gabi3551g00029 405 Gene3D - 31 117 IPR012677 -
Gabi3551g00029 405 SMART rrm1_1 35 107 IPR000504 GO:0003723
Gabi3551g00029 405 FunFam Heterogeneous nuclear ribonucleoprotein 1 31 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00029 Gabi-Chr3551 233799 236772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00029 31 113 Eukaryotic Initiation Factors Gene Family AT2G36660 34.884 9.79e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00029 K14411 - gmx:100788515 685.641