Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00028 ATGGTTAACTGGTTATGGTTGGTATCAAAACAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGATACTGATGAGGAGCGTCTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGCTCAACAGGTCGTGCTCGAGGTTTCGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTGTGGATAAGCACATAATTGATGGCCGTACAGTTGAAGCTAAGAAGGCTGTTCCTAGGGATGATCAGAACACTATAAATAGACAGTCGGGTGGTGTCCAAGGATCTCCTGGTCCTGGACGCACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACGGAAAGTGATTTTAAGATGTATTTTGACCAGTTTGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTCATAGAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTATCCCCTGGACCTAGCCGGAGCCCGTTGATAGGATATAACTATGGTTTGAATAGAGCCAGTACCTACCTAAACAGTTATGCTCAGGGTTTTAATATGAATCCAATTGGAGGATATGGAGTTAGGATGGATGGTAGATTTAGTCCACTTACTAGTGGTAGAAGTGGGTTTACCCCATTTGGCTCCAGTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGACTTCCAATTATGGGAGCAGTCTAGGATATGGTCGGATTAGTCCTTTCTACAGTGGCAACTCTAGCAGATATACTACTCCTATTGGCTATAGTGGGGGCAACGGGAGAAGTGATTCTCTTATGAACTCAACTTCTCGGAATGTCTGGGGAAATGGAGGCCTGAATAATGCTGCCAATAACCCCCTCAGTTCTGGTGCTTACTTGGGATCTGGAAGTGGAGCTTTCGGTGTTTCAATCGGAAATAGTGGGACAAATTGGGGTCCATCTGTTCCAACCCAGGGTGGAGGAGCTGCTTCTGGCTATAGTAATTGGAGTAATGTTTATGAAGGTGGAGATAGCAGCATCGGATTAGGAGGGGGAGGATATGAAAGGAACAGCAGCGCAAGTGTGACTCAGTCCTCAGCTTTTACTGCGCCAACTGGTGGTTATGAAGGATCCTACGGGAACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCCGTCTGCTGCTTCTGAGATGGATGGTTCTGGTTCATTTGGTTATGGACTTGGTGGTATAACTTCAGATGATCCAGTAAAGAGTTCTGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGACAATCTAATAGAGGAATTGCTGCCTAG 1467 0.4438 MVNWLWLVSKQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRSTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTINRQSGGVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHRTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASTYLNSYAQGFNMNPIGGYGVRMDGRFSPLTSGRSGFTPFGSSGYGMGVNLDSGLNPSYGGTSNYGSSLGYGRISPFYSGNSSRYTTPIGYSGGNGRSDSLMNSTSRNVWGNGGLNNAANNPLSSGAYLGSGSGAFGVSIGNSGTNWGPSVPTQGGGAASGYSNWSNVYEGGDSSIGLGGGGYERNSSASVTQSSAFTAPTGGYEGSYGNLYRSGSVYSDSTWPSAASEMDGSGSFGYGLGGITSDDPVKSSEGFIGNYNVTSRQSNRGIAA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00028 488 SMART rrm1_1 118 190 IPR000504 GO:0003723
Gabi3551g00028 488 SMART rrm1_1 18 89 IPR000504 GO:0003723
Gabi3551g00028 488 MobiDBLite consensus disorder prediction 92 115 - -
Gabi3551g00028 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Gabi3551g00028 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 86 IPR000504 GO:0003723
Gabi3551g00028 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 93 IPR000504 GO:0003723
Gabi3551g00028 488 Gene3D - 17 99 IPR012677 -
Gabi3551g00028 488 FunFam Heterogeneous nuclear ribonucleoprotein 1 16 98 - -
Gabi3551g00028 488 Gene3D - 114 200 IPR012677 -
Gabi3551g00028 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Gabi3551g00028 488 SUPERFAMILY RNA-binding domain, RBD 116 204 IPR035979 GO:0003676
Gabi3551g00028 488 FunFam Heterogeneous nuclear ribonucleoprotein 1 114 201 - -
Gabi3551g00028 488 CDD RRM1_hnRNPA_hnRNPD_like 19 89 - -
Gabi3551g00028 488 SUPERFAMILY RNA-binding domain, RBD 11 115 IPR035979 GO:0003676
Gabi3551g00028 488 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 12 484 - -
Gabi3551g00028 488 CDD RRM2_Hrp1p 118 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00028 Gabi-Chr3551 233649 236772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00028 16 191 Eukaryotic Initiation Factors Gene Family AT2G23350 22.472 1.22e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00028 K14411 - gmx:100788515 826.239