Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00027 ATGCAGGACACAAGAGATCTTGCTATGTTTCTAAGGAAGCTGGTTTGCTTTGCTCTACTTCCATTCTTTATCATGGTTTGTACAGGAGGTGAGTTATCAGAATCTGAGTTTTTCTTCAATTTCCTTAGGGGTGTTGATCCCAAAAATGTACTTAACATTAGCTGGAATGGGTCAGCATCGAATCCGTGCTTGGTTAAGTTGAATGGTGTAAGATGTAACTCGAATGCTACTAATATTGTAGAGATAAGGCTTGAAAACTTGAACCTTACTGGCATAATTGATGCAGATTCCCTATGCAGGCTCAAAAAGCTTAGAGTGGTGAGCTTAGCTAAGAATAACATTAGAGGAACTATTCCACACTCAATTTTGCAGTGTACAAGGTTGATGCATTTAAATGTAACCAGCAATCAATTGAGTGGGAGGGTACCTAAGGCTTTAACAAAATTAAAATATCTGAAAAGCTTAGACATCTCTAACAATAAATTTTCTGGTGTGATTCCAAGTAAAAAAGAATATAAGCGTCCTTTTACTTATTATGTGACTCCAAGAAAGTTAGAAAGCAACAAGGAAGGTTATACAAATACAAATCAACCAGCACCAGCTCCTTTAAGTGGCAGCACACCTGGTAATGCCAAGAAGCCATGGTATTTTCATTGGGAAGCCTTGTTGGTGTTAATTTTGGGCATTGGTTTGGTTTTTCCATCCATTTACTTTGCTATGAAGATGTCAGCTAAGTTAAATGCAGAGGGACGTGTTATGAAAAGCCATCGTGTGTCTCCAATAAAAAAGGCTACAACTGAGATTCAAGAGGTGAAGCAAATAAAGGAAGGGGATTCAGAACTTGTGTTCTTTGTTGAAGATCATGAAAGATTCACACTAGAGGACCTGCTTCGTGCCACAGCTGACTTGCAAAGCGAAAGCTTTTCTAGCAGCCTTTACAAGGTGAAACTCGATAATAATGTTCACTATGCAGTCAAAAGATTAAAGAATTTGCAGGTATCATCTGATGAATTTGGAGAGACATTAAAGCAGATAAGTAACTTGAAACATCCAAATATCCTTCCCCTTGTTGGTTACCGCTCTACAAGTGAAGAAAAACTCATCATTTACAAATATCAAAGCAATGGAAGTTTGCTTAATCTTTTAAACGATTATATAGCAGGTAGAAAAGATTTCTCATGGAAACTACGTCTCTCTATAGCATGTGGGATTGCAAGGGGTTTGGGTTTCATATATAAGAAGGTGGATGGACAGGAGGTCATTCCTCATGGAAATCTTAAGCTATCAAATATCCTTCTCAATGACAACAATGAACCACTAATAAGTGAGCATGGGTTATCAAAATTCATGGACACAAATAGAGGTTTCCTGTTTTCCTCTCAGGGATATACAGCTCCTGAAAAGAGTTTAACAGAAAAGGGTGATGTCTATAGCTTTGGAGTGATTCTCTTGGAGTTACTGACAGGAAAAAGCATAGAAGTAAGTAGAATAGACCTTGCAAGATGGGTGAGGTCCATGGTAAGGGAAGAATGGACAGGTGAGGTCTTTGACAAGGAGGTTAGGGAAAATGAACATCAATGGGCATTTCCTTTGCTGAATATAGCCCTCATGTGTGTATCACGTTTCCAAGAAAATAGGCCAACCACGGTAGAGATTTTGGAGAAGATGGAGGAGGTAATGGATGAACATGAACAACAACAGGGACTTTTCGCTTCAACACACTGTTCTAATGGATCCAACCGTGAAGATTGTTGTTCACTTCACCAAATCATACCTGACACATGGGATTCTCCAGGATCAAATTATTGA 1809 0.387 MQDTRDLAMFLRKLVCFALLPFFIMVCTGGELSESEFFFNFLRGVDPKNVLNISWNGSASNPCLVKLNGVRCNSNATNIVEIRLENLNLTGIIDADSLCRLKKLRVVSLAKNNIRGTIPHSILQCTRLMHLNVTSNQLSGRVPKALTKLKYLKSLDISNNKFSGVIPSKKEYKRPFTYYVTPRKLESNKEGYTNTNQPAPAPLSGSTPGNAKKPWYFHWEALLVLILGIGLVFPSIYFAMKMSAKLNAEGRVMKSHRVSPIKKATTEIQEVKQIKEGDSELVFFVEDHERFTLEDLLRATADLQSESFSSSLYKVKLDNNVHYAVKRLKNLQVSSDEFGETLKQISNLKHPNILPLVGYRSTSEEKLIIYKYQSNGSLLNLLNDYIAGRKDFSWKLRLSIACGIARGLGFIYKKVDGQEVIPHGNLKLSNILLNDNNEPLISEHGLSKFMDTNRGFLFSSQGYTAPEKSLTEKGDVYSFGVILLELLTGKSIEVSRIDLARWVRSMVREEWTGEVFDKEVRENEHQWAFPLLNIALMCVSRFQENRPTTVEILEKMEEVMDEHEQQQGLFASTHCSNGSNREDCCSLHQIIPDTWDSPGSNY 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00027 602 SUPERFAMILY L domain-like 51 168 - -
Gabi3551g00027 602 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 95 172 - -
Gabi3551g00027 602 PANTHER OS05G0588300 PROTEIN 204 564 - -
Gabi3551g00027 602 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Gabi3551g00027 602 Gene3D Transferase(Phosphotransferase) domain 1 374 578 - -
Gabi3551g00027 602 Gene3D Phosphorylase Kinase; domain 1 261 372 - -
Gabi3551g00027 602 Gene3D Ribonuclease Inhibitor 34 178 IPR032675 -
Gabi3551g00027 602 SUPERFAMILY Protein kinase-like (PK-like) 310 556 IPR011009 -
Gabi3551g00027 602 ProSiteProfiles Protein kinase domain profile. 268 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3551g00027 602 Pfam Protein tyrosine and serine/threonine kinase 315 555 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00027 Gabi-Chr3551 216522 218782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00027 15 562 Receptor kinase-like Gene Family AT5G53320 31.842 9.94e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi3551g00027 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00027 - - gmx:100807491 910.598