Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3551g00021 ATGCAAACGTCTCAGAAACATAAAATGTCCTTTGGCTCTGGCTTGTTCAGCACGGAGCCAGAGCAAAATTTGGAGTATTGTTGCTTTCTGCCAAGTGAGAACCTAGAAAACTACTCATCCTCTGATAACAGTAGCCATGCAACCTACCCTTCTTTTCATACTTTAGAACAATATTCCACCCTTGAATCTTCTACAAACAACAGTTTCCCTTACCAACATTCTCCATCTACTGTCAGTTTCTCACCTTACAATAGCCCAGTCTCAAAGCTCCAATCAAAATCATGTGTGTTGAGGTCACAGCATTCTCTTGAAATTATTAGTGATTCACTAGAAAATGAATCTAGTTTGACACATGACCACGATGAACTGATGCACAAGATAAGGGAGCTCGAAAGTGCTATGCTGGGACTTGATGCAGATGTTCTGGACATATATGATCCTGTAACTCCACGTGAATCTGATTCATTCTTGTTAGAGGCTGAGAAGTGCAAGAAAATGAAGGAGATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGTACTTGTGCAAAAGCAATGGCAGTGAATGATATGGAGACAACCGACCGGTTGATGTCGGAGTTGCCTAAAATGGTGTCGGTTACTGGCAACCCAATCCAACGATTGGGTGCATATATGTTGGAGGCTCTTGTTGCAAGGTTGGCTTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGGAATGAACTCCTTTCGTACATGCATGTACTTTATGAAATCTGCCCATATCTCAAATTTGGGTACATGTCAGCAAATGGAGCAATTGCTGAAGCCATGAAAGAGGAAAGAAAAGTCCATATAATCGATTTTCAGATTAACCAGGGAACCCAGTGGATAAGCCTAATTCAAGCTCTTGCTGGAAGACCAGGAGGAGCCCCAAAGATTAGAATAACAGGTGTTGATGACTCTACTTCAGCTTATGCTAGGGGTGGGGGGCTTGATATTGTTGGAGAAAGGTTATCAAGACATGCACAATCATATAATGTACCCTTTGAGTTCCATGCTATAGGAGCTGCTCCTACTGAGGTAGGACTTGAAGACCTTGAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCAATGATGCTGCATCATGTACCAGATGAAAGTGTGGACAGTCAGAATCATCGAGACCGGTTGTTGAAATTGGCAAAGTCCTTGTCTCCTAAGGTAGTGACACTGGTTGAGCAAGAATCAAATACCAACAACCTCCCATTCTTCCCCCGTTTTGTTGAGACAATGAATTACTACTTGGCTGTTTTTGAATCAATTGATGTTGCACTTCCAAGGGAGCACAGAGAAAGGATTAATGTGGAACAGCATTGTTTGGCTCGAGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCATGAGCTTCTGAAGAAGTGGAGATCACGCTTCATAATGGCTGGATTCACACCATATCCATTGAGCCCCTTTATTAATTGTTCAATAAAAAATCTTCAGGAAAGCTACCAAGGACATTACACTCTTGAAGAGAGAGATGGTGCTCTATATCTTGGTTGGATGAATCAAGTTCTTATTGCCTCTTGTTCTTGGAGGTGA 1638 0.4206 MQTSQKHKMSFGSGLFSTEPEQNLEYCCFLPSENLENYSSSDNSSHATYPSFHTLEQYSTLESSTNNSFPYQHSPSTVSFSPYNSPVSKLQSKSCVLRSQHSLEIISDSLENESSLTHDHDELMHKIRELESAMLGLDADVLDIYDPVTPRESDSFLLEAEKCKKMKEMISRGDLKEMLCTCAKAMAVNDMETTDRLMSELPKMVSVTGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGNELLSYMHVLYEICPYLKFGYMSANGAIAEAMKEERKVHIIDFQINQGTQWISLIQALAGRPGGAPKIRITGVDDSTSAYARGGGLDIVGERLSRHAQSYNVPFEFHAIGAAPTEVGLEDLELRPGEAIAVNFAMMLHHVPDESVDSQNHRDRLLKLAKSLSPKVVTLVEQESNTNNLPFFPRFVETMNYYLAVFESIDVALPREHRERINVEQHCLAREVVNLVACEGAERVERHELLKKWRSRFIMAGFTPYPLSPFINCSIKNLQESYQGHYTLEERDGALYLGWMNQVLIASCSWR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3551g00021 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Gabi3551g00021 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 114 538 IPR005202 -
Gabi3551g00021 545 Pfam GRAS domain family 176 545 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3551g00021 Gabi-Chr3551 172142 173943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3551g00021 31 545 GRAS Transcription Factor Family AT5G48150 56.979 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi3551g00021 GRAS 1.1e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3551g00021 - - gmx:100779977 892.878